XLOC_016808


Basic Information

Item Value
gene id XLOC_016808
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45413601 ~ 45415299 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033933
GTTAAGCACTATTTTAATCTGTATATTTGTTCAGTTGATATTGGTTATGCTCTGCTAGTTGTTTACTACAGACTGTTCACATGACttcaacattttaatattatataggTTAGGTTAGTAGTTTCTTTTCCAATATTACAATAAGAATTGCTACAGTATATGGCATAAATTATTAGACTTTTGCATAATTCAAATTAACAaccaaaaataattcaaatgttacTTTACTCCTTTAATCAGGGCTGCCCAAACTAGGTCCTGGAGGGGCGGTGtactgcatattttagtttcaactcCAATTAGACACCTGAATCAACTAATCAAGCTTTTTCTAAGCATACTAGAAAACTCCATGCAggtgagttaaaaaaaaagttggagctaaacgATGCAGGacaccgagtttggacacccctgctttaaattaTAACTGTTTTACTTTGGCCAGTAAGATTTTAGTAGACCAAGTGAATGTATGAATCTGACTGGAACAGTAGTTCAGTGAGCCATGCTTAATGTTTTAACTCTTAAAGACATGCATGAATGTAATTTCAATCAATATTGTGCCAGTACTTCCTTGTAGTATCGCATCTGGATATTTATTTATGGTATTGTATTAAAGTAAGTGACTCCTGTATGGTGACTACACTAGTATGTACCTGTGTGTCCGCTCAGCGCGTGCAGGCCTTGTCCTCTCTGGCAGTCGGTGGTGTAGATGTTACAGTCTCCTGCTCCTGCACTGATCAGAATGGCTCCTCCACACTCGGGACCCTCCATAAACGCCAGATCTCTAATAGTGCCGTCATGCATACTGAACTCCAGATCAGGGCCTGAAGCAGAGAGAGTGATCAATGGCACGAAAGAAATGACAGCTCCCATGTAAATGTGGTCcaggctctgattggctgctggtcgtGGAGAGCTATAAACCTAAATTTCTGGCAGAGTTCGAGGAGCTCATTTTTAGTGTGACGGTTCCTGGGAGTggagagctcctggatttcccCTCCGGCCAACGACCAATCTTTAATCCTGTCAAAATGTCCACGTATGCTTACTTTTTTAGAGTTAGAGCTTGTATGGGTGGCCTGCcgatttatttgattacttttgagtttgtttatatttagGAAGGAAGATAAGCttcctgtatttttctttaaagatttataggtaatttagtttatttactttgcAGATTCTTTGTATGTTATTTTGGGCAGTAGCCATCCTGAAGAGATCCTCATTTAAATTGCTACTTTTTTAAGAATAAATCGATTTAATTACTCTCAACTGAGTGTCCGCGTTTGGTTGTCGACCGTAGGGGATTTTTggcaaaagtttttttgtttcctttgggaaatccaccacccataaccttattttgtttattatgccCATAGttttttcccctagacttggggcgtaatagTCAAAATTAAATTATTCCAATAAGGCAAAAAGACTGAAGATAAATAGGGTAAATGTGTTACTAATCAATGTCATCATTGCTACTATTTTAAACTAcaacttttattaaatgtttaaatatgcaaatgag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033933 True 1561 lncRNA 0.38 2 45413601 45415299

Neighbor

gene id symbol gene type direction distance location
XLOC_016807 SAMD9 coding downstream 76626 45332137 ~ 45336975 (-)
XLOC_016806 si:dkey-13n23.3 coding downstream 82486 45330452 ~ 45331115 (-)
XLOC_016805 NA coding downstream 186356 45225122 ~ 45227245 (-)
XLOC_016804 dre-mir-181b-1 coding downstream 211270 45202223 ~ 45202331 (-)
XLOC_016803 CR407590.2 coding downstream 222282 45172838 ~ 45191319 (-)
XLOC_016809 NA coding upstream 12359 45427658 ~ 45448291 (-)
XLOC_016810 gpsm2 coding upstream 75733 45491032 ~ 45510704 (-)
XLOC_016811 NA coding upstream 140881 45556180 ~ 45556664 (-)
XLOC_016812 CR450720.1 coding upstream 214408 45629707 ~ 45630823 (-)
XLOC_016813 prpf38b coding upstream 239995 45655294 ~ 45663945 (-)
XLOC_016800 CU929150.3 non-coding downstream 314097 45099174 ~ 45099504 (-)
XLOC_016799 NA non-coding downstream 315203 45095017 ~ 45098398 (-)
XLOC_016798 CR293505.1 non-coding downstream 339691 45073794 ~ 45073910 (-)
XLOC_016815 CU467828.1 non-coding upstream 329564 45744863 ~ 45744979 (-)
XLOC_016816 NA non-coding upstream 604062 46019361 ~ 46034111 (-)
XLOC_016817 NA non-coding upstream 1447736 46863035 ~ 46865562 (-)

Expression


Co-expression Network