XLOC_016971


Basic Information

Item Value
gene id XLOC_016971
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56809292 ~ 56884888 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033427
tgaaAATGCAATACTCCAGTTCCGATGGAAACATAGTGTCCTGACATAGTGTTGTGGCTGTTTCCAGATCAGTGTGGATCGCGGGATGCCCTGGAAAGAGGCCTGCAGTAAAGCTGAGAAACTCACTGGAGATTACGAAGGCTTTTACCTCTCAAACAAGCTGCGTGGGAGTCAGCCGTGCGTCCTGCTTGCTGAACAGGGTCGTGGTCGGAACCTGATCCTCTACAAACCCAACATCGGCAAACAGGCTCATCCTGAGAACCTGGACAACCTCCTCCTCAGATACTACAAGGTGTTGCCTGAGGATGCAAAAGATGTCTGGGAAAGCCAGTTTGACTTCTCCTTCACTAACTGTAGCCACGCCAACTGgaagGGAAAGTGTAAGCAGATCGAGGAGGGTCAGGAGTGTTTTCTGGGAATGCGTCTCCGCCAGTATCACATGCTGTGTGGAGCTCTGCTGCGCGTCTGGAAACGAGTGTCTGACATCGTCTCGGACATCACCAACTCCAGCATCCTGCAGATCGTGAGACTCAAAACCAAACAGAACAGCAAGCAAGTTGGTATAAAAATCCCTGAAAACTGTGTATCCCGTGTGCGCGCTGAGCTCTCTCGAATGGACGAGGAGGTGAAGAAAGCACGGCGCGAGAGAGAGCAGTTCGCAAATGAACAGCGCCTCCGCCAAGAAATGCTGGCCAAGATGCTCAACGCTCGCAAACTCATCGCCAACCCTCCACGCTCTCTTCCCAACCACTTAAACTACCCACGATCCCTCCTGCCACAAACATTACAACCCAAAACCGAAGCCGTCAGTGAGGTTTTGGATCTAACTGTAAGTCCTTGCCCCTCACCGGACATCAAAGCACCCACTCCTAACATAAACGGCGTGTCTATAAATGTCCTGAACAGCAGAGGGCGCCAATCTGGAGTCGTTCCTGAAACGTTCGATCTTGAGGACCTGATTTCCCAGGAGCAGCAGAGACACCGACAGGTGGTGTTAAACTCAAACATGCGCATGCCGTCATCGCATTCGTCTTTAAACATCCCGCAGCAGCACGTTCACACATTAAAGCAGAATCATTCGTCATTTGGAGTGCTAACACAGCAGCCGAATGCAACCAGGTCTGCGCAATACAGCGCGCTTCTGTCACAGCTACGCCAAGGGAACGATAAATCCCTCATGATGCGAATTCTCACGCAAATGAGCCAGAAAAACAGTTCACCATCACAGCCCTCACATGCAATGCTTCATCAAAACAGCATACCACACACTTCTAGCGTGCATTCGCAACTACCGAAGAGACGCGTAAACGAACATGTGCAGTCGCAGCCAATGCAGACTCAACCTGAAAGACCATCCAGACCAAAGGACGAGTTTGATTTCGATGACTTGGACTTCGGTTACCCTTCGCCCGATTCTCAAAAGTACCCGTTCACCTCACAGGCCTTGCCATCCTCGACCCCGCCCCCTCCTCCCTACTCCTCCTCCCTCTTTGCACCGGCACCTCCAAACTCCTCCCTCTCAGACTCTAGCTCCTCCTCCTCGCACTTCACACCTTCCTCGTCCTCCTCTTCCGAGCAAACGCATCTGTTACCGAACGGCCACAGCAGTATGGACAGCCTGGAGACGCTGGATCACATGATCCACGGAGCACCATCAGATCACCGCCAGTCCGTCATCCAGTTCAAATCAGTGGACTGGGACGCCACCTAGAGGTAGCTCGAAACACGCACAGTCAGAaatttaagggttagttcactcaaaagtgttcattctgctattaattactcaccctcatgctaTTCCAAATGCAAAACATCTTCGTTTATTGTTGTAacgcacaaattaagatattttagaagaaatgctggagctctctgaccctccatgaagtctttttatatttccgggtttctcagcagcagaagtaaTCATAGTTGGTAAACGTAGAGCGCAGTGAattggagagtacaacaaatcattgATTTACAATCTTATtcgctgaaataataaaagaaaaactccacgatggtgttgTCAAGacttcagaaaaagcaaaacaatagtgtgagactgataacggcagccaaaagagagaataatgtcagatttactgtcaTACACAAGCGGTAGTTTTTTtgcaatttgatgcaaagataatataatacatatgtacataaatataaatgtgcataagttatttttttaaatatcaaaacatgaaaacctttcaaggatttaagattatgatgattGTTAAACCCATCATAACGTTCTTGTGAAAAGGTTCCATTGACAACAAGGGTCCTGAAACTTTCaaagtctacagcaggggtgtcaaactcaatttctggagggccacagccatgcacagtttagctttaaccctaataaaacacacctgatcaaactcatTGAGTCCTTCaaagcttgtttgaaacctacaggtaagtgtgttgaagcagggttagaactaaactgtgcagggctgtggccctctaggaactgagtttgacacccctggtctacagtgttcatacggtcatggaaaacctggaaaagtcagggaattttgacatggcattttccaggcgtggaaaagttttggaaaaacagaaaaacccaaaaagttttggaaaagtcatggaaattttgCATTTAATCATTCAGCAGACGtttttttgtccaaagcgacttaagctgcgttcacactagagcttgtgcttgcgaaattctgtcgctGTGAAAAGAGCTGgtattaaacaatatgattagacgtaaataaaagtgagcgattgctccatatttgaaatctcttattttaaatgatcttctattggtctaacACAATCACCTCATGCGATTACGTAGGTAATAATTCTCCAAGCTTGAAGCTTTGAATGCAGTGAAATGTGAAACAAgtgcttgcgtttctggtctgccacattcgcatgcctatgaatggaagtctatggagcaaAAAGTGCAGTGTCATCGCAGCAAAAGAAGTAGTTTTACCTACTATTACTAGTTTACCAAACTATTGACATCATctaaaattagtttaacaaatatcagtATACTGGAATGGAGGTTTTCACTTCTtttcttggccaaaaacatgctctcacaTCATTCGTGCTGTGTAAGCATAatctattttacatagatataaaaataaattgatactAAAGAGATTGTTGCGTGCTTAATGAAATGCTGTAGTGAATTTTAACGTTTATTGTTTTTCCTATGATTTACCACGTATACATCAGgtcatgaaaattgacttgaaagtcCTTGGAAAAGTCCCggaatttttgtagtaaaaatgtgtatgaaccgtGAGTCTAGTCATTGGGTCAACTGTAAGGTTATGAAGCTTCAAGAATCAGGCTAAACAAGCAAAATTAACGACTTTGTTTAACATCTTTAGGACTAGTATTTATAAGAGCACTATTGTTCATAGTCGCACAGaaaattatgatattttagaAGAAGTGCTGGAGCTCTCTGATTGACAGCAAGGGTCCTGAAACTTTCAAAGTCTAGAAAGggaccaaaaacattgtcaaaacggTCTGTTTTATTAGTGGGTCAACCGTAATTTACGAAGCCACAAGAATAAATct
>TCONS_00033133
agagatgGCTGACGAATGATGGGGGTTTGACATGTTTCTGGTCGGAGCCTGATGCCCACTCTTGCCACGTCTGTTGTCATGGACACGGAGGACTATCTGCACCCTGAGGGCCCTCAGCTGGGGAGCCCCAAATTCAGCGCTCCCAGTCCTCCTCTCACAAGTTCCATGGAGAGTCAGCTGTATCAGCCCAACTCATGGGCGTACTCACAGCAAGCTCAATACAACCAGCACTATCCTATGCAATCTGGAAGGCAGCTCCAGCCGACCCCGTCCTTTATGAATCTGGACCTGTCTGACATAGACTTTCATGAACTTGTGCGGAATGGAGACTTTTCCCAGGAGCTGCCATGCACAGACGAGGTGGCATCGCTGTTCTCATCACCATCTGACTCTCTGCTGGAGTACCCAGAACCTTCAGGATTTGGCACTGATAGTCTGGCACAGTTAACTGGCGAGGGTCCTGCAGCACAGATGTACTGGGATATACCTGGACACAGTCAGAGACCGCTAAACCTGAGCGCGTTTCCTGGCAGGTTGGATGAATTGAACGCGATCCTGTCTCCGTCAGTGGCCGGATTTAAGGCTGCTGCTGCTCCTGCTCCACCACccgaggaagaggaggaggcAGATGATGAAGAGACGGAGGAGTTGGGGCACGCCGACACTTACGCCGAATACAAGCCATCCAAATCCACTATAGGAATCTCTCATCCTGATATCGTGGTGGAGACCAACACACTGTCCAGCGTTCCTCCTCCTGACATCACATACACACTGTCCATTCCAGACAGCACCGTAAGCACAGGCCTGCTGTCCGCCCTGCAGCTCGAGGCCATCATCTACGCCTGCCAGCAACACGAGGTGATTCTTCAGAATGGTCAGCGAGCAGGTTTTCTGATCGGAGACGGAGCTGGTGTCGGGAAAGGACGCACTGTGGCTGGAATCATACTAGAGAACTTCTTAAAGGGACGGAAGAGAGCGCTGTGGTTCAGTGTGTCGAATGACCTGAAGTATGATGCTGAGAGAGATCTCAAGGACATCGACGCTCCTAACATCCCTGTGTTTGCATTAAATAAGATTAAATATGGAGATACGGCTACCTCAGAGGGCGTTCTGTTCGCCACATACTCAGCGCTGATTGGAGAGAGTCAGGCCGGCGGGCAGCATCGCACCCGACTTAAACAGATCCTGGACTGGTGCAAACCCAGCTTTGATGGAGTCATTGTGTTTGACGAGTGCCATAAGGCTAAGAATGCAACCTCCACTAAAATGGGTAAAGCCGTTCTGGACCTGCAGAGCAAACTTCCTCGAGCAAGAGTGGTGTATGCTAGTGCCACAGGTGCTTCTGAGCCAAAGAATATGATCTACATGAGCCGGCTGGGGATTTGGGGGCAAGGAACACCCTTCAAGACCTTTGACGACTTCCTGCACGCTATTGAGAAGAGGGGCGTTGGTGCTATGGAGATTGTGGCGATGGATATGAAAGTGAGTGGCATGTATATCGCCCGGCAGCTCAGCTTTTCCGGCGTCTCCTTTCGGATAGAGGAGATCGCACTGGATGAAGAGTTTAAACTGGTCTACAATAAAGCCGCCAGACTGTGGGCAGAAGCTTTGGAGCTGTTCAACAGAGCTGCAGACACGCTGGGTCTGGCGTCCCGTAAGTCTCTATGGGGTCAGTTCTGGTCATCCCATCAGAGGTTTTTTAAGTACCTCTGCATCGCTGCTAAAGTACGTCGTCTGGTTGACCTCGCACATATGGAGATGCAGCAGGGCAAGTGCATCGTGATTGGCCTGCAGTCCACAGGAGAGGCTCGTACTCGAGAAGTCCTGGACGAGAATGACGGACATTTGGACAAATTCATCTCCGCTGCAGAGAGGGTTTTCCAGTCGTTAGTACAGAAACACTTTCCAACACAGAAACCCAAAAGAGAGAAAAGTGCTGCAAACAAGAGGAAACGAAAACCCAGAGGCCGGCCTTCAAAGTTTCCTAAGCAGCGTGTGGAAGTGGGCGGAGTTATTAAAATCAGCGATGACTCAGACTCTGACTCTGACGAGTTTGACAGCGAATCAAACTCCTCCCCCGAATCACTACAGGACAATGATGATGTGATTTTCGTCAACCACATCAACGGGCCTGCTGctaaACTGGAGGAGCTGAAGCAGAGGCTGCTGCATAGAATAGCGGAGCTGGGAAAGGAGTTGCCGCTGAACACTCTGGATGAGCTGATCGACCGATTCGGAGGACCAGAGAAAGTGTCGGAGATGACGGGCCGTAAAGGACGGGTGGTGCGGCGTCCGGATGGCAGCGTTCGATACGAAAGCAGAGCAGAGCAAGGCCTAACCATCGACCACGTCAACGTCCGAGAGAAAGAGCGCTTCATGTCTGGAGAAAAGctcATAGCCATCATCTCTGAAGCGGCCAGTTCGGGAATTTCTCTGCAAGCGGATAAACGTGTGCAGAACCGCAGGAGGAGAGTCCACATGACACTAGAGCTGCCGTGGAGCGCAGATCGTGCCATCCAGCAGTTCGGCCGAACGCATCGCTCAAATCAGGTTACAGCTCCAGAGTATATATTCCTCATCTCGGAGCTAGCAGGAGAACGACGCTTTGCCTCTATCGTGGCCAAGAGACTGGAGAGCCTgGGAGCGCTGACACACGGGGACCGACGAGCCACAGAATCCAGAGACCTGAGCCAATACAACTTTGagaacaaaTACGGCACCAAAGCTTTGGATAAGATCACTAAAGCCATCCTGGGACACATCGACAACAAAGTCCCTCCACCCAAGGGATACCCAGGAGGAGGACTCATGTTTTTCAGAGATATGAAGAAAGGCATGATTGATGTGGGAATTTTCTGTAAGGAGCCACGGATGGGACTGAATACAGAGAAAGACTGCACCCTCACCAAGTTTCTGAACCGTATTTTGGGTCTGGAGGTCCATCACCAGAACTTTCTGTTCCAGTACTTCACAGAAAACTTTGACTACCTGATCGAAAAGGACAAAAAGGAGGGAAAATATGACATGGGGATATTGGATCTCGCTCCTGGTAATGATGAGATTCATGAGGAAACACAGGAGAAGTTTCTGACTCCAGGAAACCCTCAGGAAGGCCAGGTCATCCTCTATAAGATCAGTGTGGATCGCGGGATGCCCTGGAAAGAGGCCTGCAGTAAAGCTGAGAAACTCACTGGAGATTACGAAGGCTTTTACCTCTCAAACAAGCTGCGTGGGAGTCAGCCGTGCGTCCTGCTTGCTGAACAGGGTCGTGGTCGGAACCTGATCCTCTACAAACCCAACATCGGCAAACAGGCTCATCCTGAGAACCTGGACAACCTCCTCCTCAGATACTACAAGGTGTTGCCTGAGGATGCAAAAGATGTCTGGGAAAGCCAGTTTGACTTCTCCTTCACTAACTGTAGCCACGCCAACTGgaagGGAAAGTGTAAGCAGATCGAGGAGGGTCAGGAGTGTTTTCTGGGAATGCGTCTCCGCCAGTATCACATGCTGTGTGGAGCTCTGCTGCGCGTCTGGAAACGAGTGTCTGACATCGTCTCGGACATCACCAACTCCAGCATCCTGCAGATCGTGAGACTCAAAACCAAACAGAACAGCAAGCAAGTTGGTATAAAAATCCCTGAAAACTGTGTATCCCGTGTGCGCGCTGAGCTCTCTCGAATGGACGAGGAGGTGAAGAAAGCACGGCGCGAGAGAGAGCAGTTCGCAAATGAACAGCGCCTCCGCCAAGAAATGCTGGCCAAGATGCTCAACGCTCGCAAACTCATCGCCAACCCTCCACGCTCTCTTCCCAACCACTTAAACTACCCACGATCCCTCCTGCCACAAACATTACAACCCAAAACCGAAGCCGTCAGTGAGGTTTTGGATCTAACTGTAAGTCCTTGCCCCTCACCGGACATCAAAGCACCCACTCCTAACATAAACGGCGTGTCTATAAATGTCCTGAACAGCAGAGGGCGCCAATCTGGAGTCGTTCCTGAAACGTTCGATCTTGAGGACCTGATTTCCCAGGAGCAGCAGAGACACCGACAGGTGGTGTTAAACTCAAACATGCGCATGCCGTCATCGCATTCGTCTTTAAACATCCCGCAGCAGCACGTTCACACATTAAAGCAGAATCATTCGTCATTTGGAGTGCTAACACAGCAGCCGAATGCAACCAGGTCTGCGCAATACAGCGCGCTTCTGTCACAGCTACGCCAAGGGAACGATAAATCCCTCATGATGCGAATTCTCACGCAAATGAGCCAGAAAAACAGTTCACCATCACAGCCCTCACATGCAATGCTTCATCAAAACAGCATACCACACACTTCTAGCGTGCATTCGCAACTACCGAAGAGACGCGTAAACGAACATGTGCAGTCGCAGCCAATGCAGACTCAACCTGAAAGACCATCCAGACCAAAGGACGAGT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-100629-3 Predicted to enable chromatin DNA binding activity and histone binding activity. Acts upstream of or within brain morphogenesis. Predicted to be active in nucleus. Is expressed in central nervous system; immature eye; neural tube; otic vesicle; and retinal neural layer. Orthologous to human SBNO2 (strawberry notch homolog 2).

Ensembl:

ensembl_id ENSDARG00000098801

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033427 False 3630 lncRNA 0.44 5 56809292 56824959
TCONS_00033133 True 4441 mRNA 0.52 31 56811549 56884888

Neighbor

gene id symbol gene type direction distance location
XLOC_016970 arhgap45a coding downstream 52223 56679214 ~ 56757069 (-)
XLOC_016969 NA coding downstream 153523 56642138 ~ 56655769 (-)
XLOC_016968 pip5k1cb coding downstream 173510 56508451 ~ 56635782 (-)
XLOC_016967 ctxn1 coding downstream 377994 56430847 ~ 56431298 (-)
XLOC_016966 cers4b coding downstream 422251 56356652 ~ 56387041 (-)
XLOC_016972 NA coding upstream 168131 57053019 ~ 57061935 (-)
XLOC_016973 slc25a42 coding upstream 191191 57076079 ~ 57110477 (-)
XLOC_016974 dre-mir-7148 coding upstream 218513 57103401 ~ 57103485 (-)
XLOC_016975 ARMC6 coding upstream 236708 57121596 ~ 57143477 (-)
XLOC_016976 NA coding upstream 318123 57203011 ~ 57204446 (-)
XLOC_016963 NA non-coding downstream 714017 56060400 ~ 56095275 (-)
XLOC_016962 CU013534.1 non-coding downstream 766662 56042512 ~ 56042630 (-)
XLOC_016956 NA non-coding downstream 1057594 55684668 ~ 55751698 (-)
XLOC_016955 NA non-coding downstream 1145317 55639371 ~ 55663975 (-)
XLOC_016979 si:ch1073-325m22.2 non-coding upstream 383893 57268781 ~ 57287258 (-)
XLOC_016981 NA non-coding upstream 516108 57400996 ~ 57405728 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_01574528_01598080 SBNO2, SBNO2A coding CI01000075 null 1574528 ~ 1598080 (-)