XLOC_016972


Basic Information

Item Value
gene id XLOC_016972
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57053019 ~ 57061935 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034000
CGGGAAGACATTAGTAAAGTACAAATAACGAACAGTTCAGTGACAAAATATGAGTAATACACGgtataattactatttttacattactgtgcgggTCACATTTTGGACGCATGCGCTACGGAAGCCGAAGAGGTCACGCGTTCTCTCATATTTATTTCAAGTTCAACGGCACATTGTGATGGTTCGTAAAAATACGTCTTCACTTACATTCGTTTTTCTTCTTAGTTTGGAGAAAGTAAAAGCCATTTAATGTCCAGAAACACTCGAGAAGTCGCCCAAATATGAACACTAGTAACTCCTGTACAGTTGTGTGAACACGTGCGCGACATTCGAGGATGGAGAAATGcGTTTGAGTGGAACGATGTCTTCATTAACGAGGGCGTCTTCCTGTTCTGCTCCATGGGAAGTGACATCATCGAGTCTTCTGATGACCTCATCAGCAGATGCACCTCTTTTGCATATTCCCTCTTTTGGATGTTGCCACGCCTCTCATGTTAAATGACAACATATGGACTGAACAAATATGGTACACTCACTGTCAACTCAGGAACTCTGGAAtgatg
>TCONS_00033134
CTCTCATATTTATTTCAAGTTCAACGGCACATTGTGATGGTTCGTAAAAATACGTCTTCACTTACATTCGTTTTTCTTCTTAGTTTGGAGAAAGTAAAAGCCATTTAATGTCCAGAAACACTCGAGAAGTCGCCCAAATATGAACACTAGTAACTCCTGTACAGTTGTGTGAACACGTGCGCGACATTCGAGGATGGAGAAATGcGTTTGAGTGGAACGATGTCTTCATTAACGAGGGCGTCTTCCTGTTCTGCTCCATGGGAAGTGACATCATCGAGTCTTCTGATGACCTCATCAGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000100430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034000 False 563 lncRNA 0.42 3 57053019 57061935
TCONS_00033134 True 301 processed_transcript 0.43 2 57058078 57061793

Neighbor

gene id symbol gene type direction distance location
XLOC_016971 NA coding downstream 168131 56809292 ~ 56884888 (-)
XLOC_016970 arhgap45a coding downstream 295950 56679214 ~ 56757069 (-)
XLOC_016969 NA coding downstream 397250 56642138 ~ 56655769 (-)
XLOC_016968 pip5k1cb coding downstream 417237 56508451 ~ 56635782 (-)
XLOC_016967 ctxn1 coding downstream 621721 56430847 ~ 56431298 (-)
XLOC_016973 slc25a42 coding upstream 14144 57076079 ~ 57110477 (-)
XLOC_016974 dre-mir-7148 coding upstream 41466 57103401 ~ 57103485 (-)
XLOC_016975 ARMC6 coding upstream 59661 57121596 ~ 57143477 (-)
XLOC_016976 NA coding upstream 141076 57203011 ~ 57204446 (-)
XLOC_016977 btbd2b coding upstream 144313 57206248 ~ 57227542 (-)
XLOC_016963 NA non-coding downstream 957744 56060400 ~ 56095275 (-)
XLOC_016962 CU013534.1 non-coding downstream 1010389 56042512 ~ 56042630 (-)
XLOC_016956 NA non-coding downstream 1301321 55684668 ~ 55751698 (-)
XLOC_016979 si:ch1073-325m22.2 non-coding upstream 206846 57268781 ~ 57287258 (-)
XLOC_016981 NA non-coding upstream 339061 57400996 ~ 57405728 (-)
XLOC_016983 NA non-coding upstream 372060 57433995 ~ 57434621 (-)

Expression


Co-expression Network