XLOC_017157 (ptger2b)


Basic Information

Item Value
gene id XLOC_017157
gene name ptger2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9683994 ~ 9694666 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034204
GACTGAAACCCCACCTCACTTTCGTTTTAAAGTCATGGGCTGTGCGTAAAAGCTCGCCTTCACTATAAGTTTGGATCTTCTCTACCATGAAATTTCCCTCATATATATCTCTTCAACCAGCGCAGAATTAACCCAGGGTTGGACAATAAAGTAACTTTCATGGCGTCACAGAACGTCAGTTGCCGCGAGCAGATCAGCGTCTCTGGAGGATCTCCCACAATACCCGCGTTCATGTTTTCCACCGGTGTCCTTGGGAATGTGGTCGCCTTAATCCTCTTGGAAATGCGGCGGAGGAAACAACCGGCATCTCTATTCCACGTCCTGGTCTCATCTCTAGTCATCACGGATTTGCTGGGAACTTTCTCCCTCAGTCCTCTAGTTTTAACTGCGTACTTCAGGAACGCGTCTCTGCTCGGGATGAATGAAAATCGGCTGGCCTGCGGACATTTTGCATACGCGATGACATTTTTCAGCGTGGTGACCCTCGCCATTCTTCTGTCCATGGCCGTGGAGCGCTGGCTCTCCATTGGCCATCCTTTCTTTTACGAGAAGTACTCGAGTAAACGGTGCGGGTACATCACCATCGCGCTCATTTACCTGCTGTGCGCGCTCTTCTGCGTCACACCTTTCCTCGGGTTCGGGAAGTATGTCCAGTACTGTCCGGGAACGTGGTGCTTCATTGATATGGACCCGTCTGCGAGCGAACACAAGGCGTTTAATATCATCTACGCGTCTTGTTTGCTGCTCATGATAGTGTGTACTGTTTTGTGCAACGCGTCCGTCATTTATCACATTTCGCGCATGTATAGGAGGCTGAAGGCGCACCGGAGCTCAGTCCGGCGGCAGCGCGGACACAAGAGACACCGCTCCATGACCAAGGAGGTTGAACATCTGGTGCTGCTGTGGTTCATGACAATAGCATTCGTCTTTTGCTCTCTTCCTCTTGTGATTCAAGTTTACCACAATACTCTCTACCACCGAGATCGTCACAGAAACAATGTCATCCCCCTTCTTTTCCTCTCGGCCAACCCCATCATCGACCCCTGGGTGTTCATCATCCTCAGCCCTCCGGTGCCCCGTCTGCTCTGGGACAAGATCTGTAAAGCTGCAAAATCCAAACCCATCAGGGAGAAGGTGCACAGCATTCACCCTGTCCTGTACCATTCGAGTCCACCTGCAGACTGAGGAGATAGAGGAGGATCTGATGGACATTTGCAGAGCAGTTCCAGGATGCAGCGGCTCCTGATCTCCAAAAGCTCTCTGTGTTTGTGGGAGAGATTATAGAGTGATTGCTCTCTCCTGTAATGAAAAAGTGAATGCTGAAAGAGCAGGTCACTAGAAACCTGAAAGGATGAGTCTAAACCTGTGGATGATAAAGctgggtggtgtgtgtgtgtgtgtgtgtgtgtatgtagataaagtcaaaattattagctcttctgtgattttcttttccaaatatttcacaaatgatgctTAAAAGGGCAAGaaatttttctcagtatttcctataatattttgtcttaTGAAGAAAgttcaatttgttttatttcggcgagaataaaagcagtttttattgtttttaaaccattttaaggtcaataatattagtgcCTTAAGCAATCATTtatttctgatagtctacagaacaaaccattgttttacaatgacttgcataattaccctaacttgcccaattaacctTATTAAGTcttaaaattgcactttaacctgaatactagtatcttgcaaaatcaCTTGAAAAATACTGTTCTGTCACCATGTCAAAGACATTCTAATAagttagttattagaaataagttgttAAAACTATCATATTTTAAGATATATTGAAACACATCTCTCCTTTAAATAGCTCTTGGAAATATTTGCAAAAGAGcgtggagggctaataattatgatttcAACTATCTATATATTTATCCACAAAGTAAacgtatttattatttttttatttatggaaaGTAAAGCATTTTTTGAAGACCggaaaatacatgtttatttatccATTAGAAACGTagtagtaaatataaataaacatttactggCTGACATGAGGAGCCGTACTTCCTGTTTAAACTATGAGGAATGTGGTTCTCTCTCTCTTGTGTGTGTGACTTCATGCTTCATCGGTTTTGTTTTCTACGTTCTGTTGCAAAAATACACAGGACCAGATCATGTCTTAGCAAGTCAGTTGATTGTGAAAGACGTACGGCTTGAATAAAACTGTTGCATGACTGATGATGATTTGGGGGAAGCTGAAGCAGACTAAACTgtgagaataaatgtttataaatgttttgaagtaa

Function

symbol description
ptger2b Enables prostaglandin E receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; cellular response to prostaglandin E stimulus; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in asthma, nasal polyps, and aspirin intolerance. Orthologous to human PTGER2 (prostaglandin E receptor 2).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0071380 cellular response to prostaglandin E stimulus biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-267 Enables prostaglandin E receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; cellular response to prostaglandin E stimulus; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in asthma, nasal polyps, and aspirin intolerance. Orthologous to human PTGER2 (prostaglandin E receptor 2).

Ensembl:

ensembl_id ENSDARG00000037033

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034204 True 2330 mRNA 0.42 2 9683994 9694666

Neighbor

gene id symbol gene type direction distance location
XLOC_017156 rad51b coding upstream 115989 9474841 ~ 9568005 (+)
XLOC_017155 si:dkey-174m14.3 coding upstream 262731 9355912 ~ 9421263 (+)
XLOC_017153 nt5c1bb coding upstream 382786 9277299 ~ 9301208 (+)
XLOC_017154 BX942842.1 coding upstream 384445 9299434 ~ 9299549 (+)
XLOC_017152 kcnk5b coding upstream 444957 9223514 ~ 9239037 (+)
XLOC_017158 BX284679.1 coding downstream 25455 9720121 ~ 9722138 (+)
XLOC_017159 psmc6 coding downstream 68698 9763364 ~ 9776334 (+)
XLOC_017160 ddhd1b coding downstream 87266 9781932 ~ 9823810 (+)
XLOC_017161 stxbp6l coding downstream 134103 9828769 ~ 9848953 (+)
XLOC_017162 NA coding downstream 256898 9951564 ~ 9953982 (+)
XLOC_017148 NA non-coding upstream 676658 8998775 ~ 9007336 (+)
XLOC_017147 NA non-coding upstream 686531 8996867 ~ 8997463 (+)
XLOC_017146 CR853291.1 non-coding upstream 688013 8993860 ~ 8995981 (+)
XLOC_017145 CR388209.3 non-coding upstream 749471 8934408 ~ 8934523 (+)
XLOC_017163 NA non-coding downstream 373269 10067935 ~ 10068758 (+)
XLOC_017165 NA non-coding downstream 526749 10221415 ~ 10225073 (+)
XLOC_017166 NA non-coding downstream 794792 10489458 ~ 10490064 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_05447070_05450078 NA coding CI01000051 null 5446899 ~ 5450475 (-)