XLOC_017398 (katnbl1)


Basic Information

Item Value
gene id XLOC_017398
gene name katnbl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29209615 ~ 29216236 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034592
CAGCATTtcaagtttgtatttatttgaatgGTCCTTCCTTTCCTCTGAAATCCTCTCAAATTCCCGTTTCTTCCTGGTTGCGCGTGGACACACTCTCGGATATATAACGTGCTCTAGGATGCACAGACAACTTTACACAATGCTATGAGTCCATTATTATGGCCACTGGAAGTCATGTTGGAAGTAATGCAGAAGTCCACAGGCTCAAGCAGGCTCAGCCCCATGACCTTCTCAAACGTATGCTTTGTTCTGGAGATGAGAAGAACATGAGGGAGGTGGATTATTTACTGAAGGACGAAACTGATCAAGAGAGATTTCCAGTGGGCCGTTGTGTGCACAAATACAGCAAAACGAAGAGAGAGGGTGTTGGCAAGAAGAAAACTCGTCTCTCTGGGGTGGGACCAAGAGCATGTCGGAAATTGCCCACCACAAGCAGGACATCTGACATGGCAAACAAAGAAAACGAACTGACCTGCGTTGATGAAGTGCAGGCTTTTCTTTACAGTGACAACTGTGGGTTCCCAGTGAACTCCACAGACGCAAAAATGGCAGGAGCTGGCTCCAAATACAGCGATTATTTTACTGAGTTATCAAAGGACCATGAAGCAATGAGTCATGTGCTCTTCGGAAGGAATCTCAGACTGAATGTTGCTTTGACTCTTTGGCGGAAAAATGCAAGCGAACTAGTGGCATACTTAAACAGaatACAAGACACGGGGGTGCTTGTTGACTGTTTGCCTGTACTTACTAAAAGTCTTCAGGGAGAACAGCCATGCATTTCACTGGGCTGTTGTGTTGATCTTTTTCCACAAGTGAAAATGATTCTTAACACTAAATATGAAGAACACCTCATCGTAGCTTTACACTGGGTTCAATCTATCATTAAGAAATGGTGGTCTGAGCTCTCCACAAACAACAAAAGTTTGCCCGAGAGCAGTTCAAACGACAGGAATGTTCAGGCAATGAAGACAATGCTGCTTGAACTGTGGCAAGGAAAGAGTCACTTAAGCTCAGTTCCAGGAACTGTAGGAGAAACTGCAAAGGTCATCGAATCATATGTGTCACAACTGCGCTGATGTATCAATGTAGCACACTAAGGAGAAAACCACTATAAACTCTTGGTGTATTTTAAGCTCTTGAGGTTGGTGAATCTGAACTCAGTAGACTGTGGTGAATTGGGGGTAGATGAACTGAACAATTCAGACACTCCAATTTCAGCACTGGAGGAGGAACTCTTCCTGCAGGCACCGAATGACTGCTTCACATTGAAGTGGACTTGCTTAGGGGCACATAATCAACTCCATGAGACTCTCTGGAATCAGGCGACTCACTGAAGTGCCAAGCAGACGTTTTAACTGTTGCACTTGTAGTGCCATGGTGTGAATCTGCTTAAGTGGATGTGATTGTGTAAGTGTACCTTTATCGGATGTTTTTTCAGTCACGCACTTGAATTGCAGGAGTTTTAAgttattagtgttgtttttgttttgtcgtCTGTTGCCTGATCGTGAATGAATATTTGAGTGTCATGTGTACATAGTGATTTTTCTTTTAATCGGCTTTCAAATAAATTGACATAATCTAAATGTTttgtatgaatatttatatattaaatgca
>TCONS_00034593
TGTTTACGAAATACGCTGGGCTGGCAACGTTTAACAAGTTATATGTTGTAGTCCATTATTATGGCCACTGGAAGTCATGTTGGAAGTAATGCAGAAGTCCACAGGCTCAAGCAGGCTCAGCCCCATGACCTTCTCAAACGTATGCTTTGTTCTGGAGATGAGAAGAACATGAGGGAGGTGGATTATTTACTGAAGGACGAAACTGATCAAGAGAGATTTCCAGTGGGCCGTTGTGTGCACAAATACAGCAAAACGAAGAGAGAGGGTGTTGGCAAGAAGAAAACTCGTCTCTCTGGGGTGGGACCAAGAGCATGTCGGAAATTGCCCACCACAAGCAGGACATCTGACATGGCAAACAAAGAAAACGAACTGACCTGCGTTGATGAAGTGCAGGCTTTTCTTTACAGTGACAACTGTGGGTTCCCAGTGAACTCCACAGACGCAAAAATGGCAGGAGCTGGCTCCAAATACAGCGATTATTTTACTGAGTTATCAAAGGACCATGAAGCAATGAGTCATGTGCTCTTCGGAAGGAATCTCAGACTGAATGTTGCTTTGACTCTTTGGCGGAAAAATGCAAGCGAACTAGTGGCATACTTAAACAGaatACAAGACACGGGGGTGCTTGTTGACTGTTTGCCTGTA
>TCONS_00034594
GAGTGTCGAGTAATCTCTAGTTTTGTCTTTTGCAATTTAAGTTAGTTAAAGATTGGCGACTGTACGTTAAAGTGTGGTTGGCTTAATTAGCTCGCTAGCGCTAACAAACCCTACACCTAAACAACAACGTCACATCACTGGAGGCCTAAAGCTCCGTCTGACAGATGTCTAGACGTTTACCAAGAATGCTAActtattaatttgaaatatttaagttGGATTTAATTGAACCGGTTCGTAGATTCACCCTCTTCCTCTGACTCAGCGTAACGTGCTACGTGAGTCCATTATTATGGCCACTGGAAGTCATGTTGGAAGTAATGCAGAAGTCCACAGGCTCAAGCAGGCTCAGCCCCATGACCTTCTCAAACGTATGCTTTGTTCTGGAGATGAGAAGAACATGAGGGAGGTGGATTATTTACTGAAGGACGAAACTGATCAAGAGAGATTTCCAGTGGGCCGTTGTGTGCACAAATACAGCAAAACGAAGAGAGAGGGTGTTGGCAAGAAGAAAACTCGTCTCTCTGGGGTGGGACCAAGAGCATGTCGGAAATTGCCCACCACAAGCAGGACATCTGACATGGCAAACAAAGAAAACGAACTGACCTGCGTTGATGAAGTGCAGGCTTTTCTTTACAGTGACAACTGTGGGTTCCCAGTGAACTCCACAGACGCAAAAATGGCAGGAGCTGGCTCCAAATACAGCGATTATTTT
>TCONS_00034595
TCTCTAGTTTTGTCTTTTGCAATTTAAGTTAGTTAAAGATTGGCGACTGTACGTTAAAGTGTGGTTGGCTTAATTAGCTCGCTAGCGCTAACAAACCCTACACCTAAACAACAACGTCACATCACTGGAGGCCTAAAGCTCCGTCTGACAGATGTCTAGACGTTTACCAAGAATGCTAActtattaatttgaaatatttaagttGGATTTAATTGAACCGGTTCGTAGATTCACCCTCTTCCTCTGACTCAGCGTAACGTGCTACGTGGTAAGACCCTATGGAGTCCATTATTATGGCCACTGGAAGTCATGTTGGAAGTAATGCAGAAGTCCACAGGCTCAAGCAGGCTCAGCCCCATGACCTTCTCAAACGTATGCTTTGTTCTGGAGATGAGAAGAACATGAGGGAGGTGGATTATTTACTGAAGGACGAAACTGATCAAGAGAGATTTCCAGTGGGCCGTTGTGTGCACAAATACAGCAAAACGAAGAGAGAGGGTGTTGGCAAGAAGAAAACTCGTCTCTCTGGGGTGGGACCAAGAGCATGTCGGAAATTGCCCACCACAAGCAGGACATCTGACATGGCAAACAAAGAAAACGAACTGACCTGCGTTGATGAAGTGCAGGCTTTTCTTTACAGTGACAACTGTGGGTTCCCAGTGAACTCCACAGACGCAAAAATGGCAGGAGCTGGCTCCAAATACAGCGATTATTTTACTGAGTTATCAAAGGACCATGAAGCAATGAGTCATGTGCTCTTCGGA

Function

symbol description
katnbl1 Predicted to enable microtubule binding activity. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in nucleolus. Orthologous to human KATNBL1 (katanin regulatory subunit B1 like 1).

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4155 Predicted to enable microtubule binding activity. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in nucleolus. Orthologous to human KATNBL1 (katanin regulatory subunit B1 like 1).

Ensembl:

ensembl_id ENSDARG00000042522

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034592 False 1618 mRNA 0.43 10 29209615 29216236
TCONS_00034593 False 645 mRNA 0.46 6 29209767 29214978
TCONS_00034594 False 715 mRNA 0.45 4 29209926 29213273
TCONS_00034595 True 764 mRNA 0.45 5 29209939 29213704

Neighbor

gene id symbol gene type direction distance location
XLOC_017396 NA coding upstream 170385 29031156 ~ 29039230 (+)
XLOC_017395 AL928866.2 coding upstream 197073 28995857 ~ 29012542 (+)
XLOC_017394 gpr176 coding upstream 235306 28960340 ~ 28974309 (+)
XLOC_017393 acot20 coding upstream 270885 28935413 ~ 28938730 (+)
XLOC_017392 slc10a1 coding upstream 341867 28861435 ~ 28867748 (+)
XLOC_017399 emc7 coding downstream 1599 29217835 ~ 29225133 (+)
XLOC_017400 NA coding downstream 15320 29231556 ~ 29269362 (+)
XLOC_017401 fmn1 coding downstream 220365 29436601 ~ 29469228 (+)
XLOC_017402 BX248136.2 coding downstream 298678 29514914 ~ 29520273 (+)
XLOC_017403 ywhaqa coding downstream 349670 29565906 ~ 29585336 (+)
XLOC_017391 AL928866.1 non-coding upstream 357332 28850233 ~ 28852283 (+)
XLOC_017389 BX901928.1 non-coding upstream 500592 28708907 ~ 28709023 (+)
XLOC_017388 BX569801.2 non-coding upstream 563550 28641979 ~ 28646065 (+)
XLOC_017406 BX255963.2 non-coding downstream 464693 29680929 ~ 29683555 (+)
XLOC_017409 NA non-coding downstream 815342 30031578 ~ 30084286 (+)
XLOC_017410 NA non-coding downstream 950898 30167134 ~ 30178215 (+)
XLOC_017412 NA non-coding downstream 1170788 30387024 ~ 30431438 (+)

Expression


Co-expression Network