XLOC_017414 (fgfr1op)


Basic Information

Item Value
gene id XLOC_017414
gene name fgfr1op
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30578163 ~ 30610170 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034617
TTGactaagtgacatttaaagagataattcactcaaaaataaagatTCTGCCATTATTTAGGCTACttacccttcacttgtcacaaacctgagtttcttctgttgaacacaaaataatataattttgaaaaatgttggcaaCTGCTAGCCATTGAataccatagtatttgttttgttttttcctaccaTGGATGACAGCttatcagtttccaacattcttcaaaatgtattttttgtttaacagaaaaaccTAAACTCACACAGGCTTGGAACCACTGGGGGATAAGTAgcctaaatgatgacagaattttcagttttgtcccCTTAAGGCCAGCtaactacactgttaaaaaaaaaaaaaaaaaaaaaaggtgacttaacttaaaattttaaggcaacttcGGGACATTTTTTAGCTGACTCAATTTTCAACCCAATTACTtcacttgactcgatttaagcTGCGTAAACTTAAAAATGTCCTTAgatataaatgtttgttgccttagaattttaagttgagtcaacttttttacagtgtactagcCATTGTTGTGTCTACCTGGAGTGGATGTGTAAACCTACTACaatcatatttcatttataaatattagttaTCTTCTTAATATTCATGAGCTGCAGGCGAGATCCAGTCAAATTAGGTCTATAGAATTAAAAATCAGCACAATCTGGCTGGGTCAATGTGTTTTTCAAAACGGACTGAAGCTGTCAAATCCAAGCATACTAACCTTAAATCTCTGATTGTTGGTGCGTTATATGAATCAACATGTGAAGTCGCTAATAGCCGCCAGGGCGCGCAGTTTTCAGCATGTAGTCACATGACACAAATTGAAGATGTCTGCGACGGAGGAGGACACGGAACTCAGAGATCTACTGATCCAAAACTTGGAAAACAGCGGTGTTTTGAATAAAATCAAGGCAGAGCTACGTGCAGCTGTTTTTCTTGCCTTGGAGGAGCAGGACAAAGTTGAGAATAAAACCCCTCTTGTGAATGAAAACTTGAAAAAGTCCCTCAACACAAAGGATGGGCGTTTGGTAGCAGGTCTTATTACTGACTTTCTCCAAGTCTTCAATTTAGACTTCACCCTTGCTGTGTTTCAACCTGAGATTAGCACGCTGAATGGACTTGACAGTCGTGAAGTGCTATCTAAAGAGCTTGGCATCTCGGAATCGGAGGTCAATAAAAACTCCCCTCTCCTGCTAGAGCTGGTGAAAAGGGGACGACACAGGGAAAAGACCTCCATTTTCACAGAGGGGGATCGGGTGGCTGATAGAACTTTTCCCAAGGAGTTGTTGCCTCGTCAGATTGCTGAAGCCCGCAAGAAATTTGATAGTCATGACAAGaaccGAAGTGGTGAGATCAACAGAGATGCGGTCATTGGAATTTTTGCAGATCTTTTCCCCCAGTTCAGCAGaaacatgcTGGACTGTTATGTCACAGAGGAACTCCGAGCCAAAGGCAAGGACACAAGCAGTACTATAGACTTTCAGGACTTTTTGGGAATGTATAAATGTTTCTTCATACAGTGTCGAAGTGTGGTTACGAGTGACAATAGTGATGCACTTTACTCCTCGAGTAAAACAACTGAAGATAAAATCATTTTGTCTTCCGCTAGCAAGGCTGGAGACAGAAGACCTGGTGAATTGTTGGGGTCTCCGAAGATCAGAGGGTCTGTTCAAGTGTCTGAAGGGTCAGAGGAGGAATCAGGACTGGGTGATGGGAAAAACCTCCCCACCCCACTCAAACGAGCACTTGAATTTGGACTGGAAGATGAGGAAGAGGAAGGAGACTCGTTCTTCGATGATCCTCTTCCTAAACCGCAGAAAACCTATGGCTGTGGTTTATCGTCAGCAGAAAAGCCTTATTCAGGCCAGAGGCATTCAGAAAAAAGCTTTAGTCAGAAAGAGAGAGAAGGCTTGGGCGGCAGTTTGGGGAAAGCATTTACTTCAGGCACACAGCTAAAGAGCGCAGGAGGATCCATCTCAGCTGAGAGCAGCAAGAAAGATCATTCATCTGACAAGAATGGAACGTCTCTTTCTATAGATAAGGGTGGCAAAGATTTTTCTACACCAAATGAAAAAACTGGATCTCCGTTGCTAGATGATGATCTTGACTATGATGACGACTTCAACAGCCATCGTTCAGAAAACTCTAAAAGTGAAGTGAGCATTGACGAGGAGATCGAGGAAGTCTCAATAGAGGGGCCTGACATTAGTGATAAGCTTGATGAAACCACTCAAGATGTGAGCGTCTCGCAGACTAGTTTGGGTGCGGACTACATGGAAGACGTTGCTTGA
>TCONS_00034618
GCCGCCAGGGCGCGCAGTTTTCAGCATGTAGTCACATGACACAAATTGAAGATGTCTGCGACGGAGGAGGACACGGAACTCAGAGATCTACTGATCCAAAACTTGGAAAACAGCGGTGTTTTGAATAAAATCAAGGCAGAGCTACGTGCAGCTGTTTTTCTTGCCTTGGAGGAGCAGGACAAAGTTGAGAATAAAACCCCTCTTGTGAATGAAAACTTGAAAAAGTCCCTCAACACAAAGGATGGGCGTTTGGTAGCAGGTCTTATTACTGACTTTCTCCAAGTCTTCAATTTAGACTTCACCCTTGCTGTGTTTCAACCTGAGATTAGCACGCTGAATGGACTTGACAGTCGTGAAGTGCTATCTAAAGAGCTTGGCATCTCGGAATCGGAGGTCAATAAAAACTCCCCTCTCCTGCTAGAGCTGGTGAAAAGGGGACGACACAGGGAAAAGACCTCCATTTTCACAGAGGTGACCTTTAATGAGCTGCATTTCAGCCAGTCAGATCAGTCCCCTGCCTTTTTGGGGGTTTATGCAGGAAATTCCTAAAAATGCTCgaattataaggttttaaaagtgcaaaagttgaaaaatattttgattaaagTGCTTTAAACGG
>TCONS_00034619
GCCGCCAGGGCGCGCAGTTTTCAGCATGTAGTCACATGACACAAATTGAAGATGTCTGCGACGGAGGAGGACACGGAACTCAGAGATCTACTGATCCAAAACTTGGAAAACAGCGGTGTTTTGAATAAAATCAAGGCAGAGCTACGTGCAGCTGTTTTTCTTGCCTTGGAGGAGCAGGACAAAGTTGAGAATAAAACCCCTCTTGTGAATGAAAACTTGAAAAAGTCCCTCAACACAAAGGATGGGCGTTTGGTAGCAGGTCTTATTACTGACTTTCTCCAAGTCTTCAATTTAGACTTCACCCTTGCTGTGTTTCAACCTGAGATTAGCACGCTGAATGGACTTGACAGTCGTGAAGTGCTATCTAAAGAGCTTGGCATCTCGGAATCGGAGGTCAATAAAAACTCCCCTCTCCTGCTAGAGCTGGTGAAAAGGGGACGACACAGGGAAAAGACCTCCATTTTCACAGAGGGGGATCGGGTGGCTGATAGAACTTTTCCCAAGGAGTTGTTGCCTCGTCAGATTGCTGAAGCCCGCAAGAAATTTGATAGTCATGACAAGaaccGAAGTGGTGAGATCAACAGAGATGCGGTCATTGGAATTTTTGCAGATCTTTTCCCCCAGTTCAGCAGaaacatgcTGGACTGTTATGTCACAGAGGAACTCCGAGCCAAAGGCAAGGACACAAGCAGTACTATAGACTTTCAGGACTTTTTGGGAATGTATAAATGTTTCTTCATACAGTGTCGAAGTGTGGTTACGAGTGACAATAGTGATGCACTTTACTCCTCGAGTAAAACAACTGAAGATAAAATCATTTTGTCTTCCGCTAGCAAGGCTGGAGACAGAAGACCTGGTGAATTGTTGGGGTCTCCGAAGATCAGAGGGTCTGTTCAAGTGTCTGAAGGGTCAGAGGAGGAATCAGGACTGGGTGATGGGAAAAACCTCCCCACCCCACTCAAACGAGCACTTGAATTTGGACTGGAAGATGAGGAAGAGGAAGGAGACTCGTTCTTCGATGATCCTCTTCCTAAACCGCAGAAAACCTATGGCTGTGGTTTATCGTCAGCAGAAAAGCCTTATTCAGGCCAGAGGCATTCAGAAAAAAGCTTTAGTCAGAAAGACCTGTCTGCTATAGGCAGTGATAAAGAGGGAGATGGAGAGGACATGCTCTCTGACTGTGAAAGCAGGCCCACTCCTGACTCTGAACGCAGGAGAGAAGGCTTGGGCGGCAGTTTGGGGAAAGCATTTACTTCAGGCACACAGCTAAAGAGCGCAGGAGGATCCATCTCAGCTGAGAGCAGCAAGAAAGATCATTCATCTGACAAGAATGATAAGGGTGGCAAAGATTTTTCTACACCAAATGAAAAAACTGGATCTCCGTTGCTAGATGATGATCTTGACTATGATGACGACTTCAACAGCCATCGTTCAGAAAACTCTAAAAGTGAAGTGAGCATTGACGAGGAGATCGAGGAAGTCTCAATAGAGGGGCCTGACATTAGTGATAAGCTTGATGAAACCACTCAAGATGTGAGCGTCTCGCAGACTAGTTTGGGTGCGGACTACATGGAAGACGTTGCTTGACATCTGAACTGTCAGTTCCTCGTTTTGTACCTTATGTATTTATGGATTTAGTtgacataataaataattaagtattgTCTC
>TCONS_00034620
TGAAGATGTCTGCGACGGAGGAGGACACGGAACTCAGAGATCTACTGATCCAAAACTTGGAAAACAGCGGTGTTTTGAATAAAATCAAGCACAACGGTTAACGTTATTAGCATAGCATAGTGATGCTAAAGTTGTTATGGGCAACAACTGGACAACAGAAGACCCTAGTGTGACAACATTGCGTTATGACAGTTATGTAACCGGTTTTTTACTCATTCATACTAATAAAGATGAAATTTCACAGTGTCACTGTTTATTCCTGCTGTGTTATTATTATACTAAATATCAACCAGCAAATCTGCCTAAGTAAATGTCGAATAAACTTGTTTTGCAAACTGACTGGGCTATAAAGGAAGTTATTTAATGTTATCAAGCCACACATAGTCTGTTTCAATTTGATATAAATCTGATTTCATTGACATTATCTGGTGCTATAATTTTGAGGTGAAATGTTCCACATGCTTATTTATAATACTGTTAGAAATCGGTGTGAATGTTGGACATATGGAGTTAGAGGCTTATTTGGCTTTACAGGCAGAGCTACGTGCAGCTGTTTTTCTTGCCTTGGAGGAGCAGGACAAAGTTGAG
>TCONS_00034621
CGAAGATCAGAGGGTCTGTTCAAGTGTCTGAAGGGTCAGAGGAGGAATCAGGACTGGGTGATGGGAAAAACCTCCCCACCCCACTCAAACGAGCACTTGAATTTGGACTGGAAGATGAGGAAGAGGAAGGAGACTCGTTCTTCGATGATCCTCTTCCTAAACCGCAGAAAACCTATGGCTGTGGTTTATCGTCAGCAGAAAAGCCTTATTCAGGCCAGAGGCATTCAGAAAAAAGCTTTAGTCAGAAAGAGAGAGAAGGCTTGGGCGGCAGTTTGGGGAAAGCATTTACTTCAGGCACACAGCTAAAGAGCGCAGGAGGATCCATCTCAGCTGAGAGCAGCAAGAAAGATCATTCATCTGACAAGAATGGAACGTCTCTTTCTATAGATAAGGGTGGCAAAGATTTTTCTACACCAAATGAAAAAACTGGATCTCCGTTGCTAGATGATGATCTTGACTATGATGACGACTTCAACAGCCATCGTTCAGAAAACTCTAAAAGTGAAGTGAGCATTGACGAGGAGATCGAGGAAGTCTCAATAGAGGGGCCTGACATTAGTGATAAGCTTGATGAAACCACTCAAGATGTGAGCGTCTCGCAGACTAGTTTGGGTGCGGACTACATGGAAGACGTTGCTTGACATCTGAACTGTCAGTTCCTCGTTTTGTACCTTATGTATTTATGGATTTAGTtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000003058

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034617 False 2319 mRNA 0.41 18 30578163 30610089
TCONS_00034618 False 619 lncRNA 0.44 5 30578967 30583267
TCONS_00034619 False 1668 mRNA 0.46 19 30578967 30610170
TCONS_00034620 False 588 processed_transcript 0.37 2 30579013 30579691
TCONS_00034621 True 695 mRNA 0.45 7 30596545 30610143

Neighbor

gene id symbol gene type direction distance location
XLOC_017413 myt1la coding upstream 4134 30445971 ~ 30574029 (+)
XLOC_017412 NA coding upstream 146725 30387024 ~ 30431438 (+)
XLOC_017411 rnaseh1 coding upstream 192593 30378803 ~ 30385570 (+)
XLOC_017410 NA coding upstream 399948 30167134 ~ 30178215 (+)
XLOC_017409 NA coding upstream 493877 30031578 ~ 30084286 (+)
XLOC_017415 ccr6a coding downstream 377 30610547 ~ 30614519 (+)
XLOC_017416 acbd3 coding downstream 92361 30702531 ~ 30721862 (+)
XLOC_017417 nhsl1b coding downstream 115608 30725778 ~ 30889820 (+)
XLOC_017418 NA coding downstream 292368 30902538 ~ 30906716 (+)
XLOC_017419 sod2 coding downstream 327764 30937934 ~ 30947547 (+)
XLOC_017406 BX255963.2 non-coding upstream 894608 29680929 ~ 29683555 (+)
XLOC_017400 NA non-coding upstream 1308801 29231556 ~ 29269362 (+)
XLOC_017420 NA non-coding downstream 364864 30975034 ~ 30982570 (+)
XLOC_017425 BX511244.1 non-coding downstream 776885 31387055 ~ 31387171 (+)
XLOC_017426 BX927258.1 non-coding downstream 1112082 31722252 ~ 31723497 (+)
XLOC_017430 BX842669.1 non-coding downstream 1621439 32231609 ~ 32240969 (+)

Expression


Co-expression Network