XLOC_017418


Basic Information

Item Value
gene id XLOC_017418
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30902538 ~ 30906716 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034626
GTGTCTCCCAGATGGTCACTTGATCTTCAGACCGGTGTTTTTCCTGCGTGGTGGCTCTCTTTGGACCTGTCTGGCTCTGGTACCAAACCCCAGGGACTGAAGAGATTCAGTGAGAAAGCGTTGAGTGGGGGACACACACAGCATTATCAGGAGCTTGGCATCTCCTCCTGTGGCAGAAATGAGATCAGAGGTCAAACGGATGGTCAGaagaaaaaaaattacaaacaggTTTGGAGTAAATGCGGACAGTCCATGCTCTTACCCACACACTCGCTGCCAGCCAGATCCACCAGCTGCAGTTTGGTCTTAAGGGGCGCCTGTGTGATGCTGGGTCGTGGAGAAGGGCATGGTGAGTGACAGGGTGAGTGGCATGGTGAGGAGGCGGGGCTAGAGGAGCGTGAAGAGGCGGCCCTGCGGCAGCGCGGGCTCCACCACTCTTTTTGAGACACTCGCTGGACGTCCTGTCTGGCATTCTGAAGCCTACGAGCTGCAGCACAGATAGATCACACTGTATGAGTCCTAAAAAAGTCTGTTAAGGTAACAAAATCCCTTGAAACAGGTCAATTGATTTTGCAGCCATCTTGGTTGACCATTATGTACTACTGCCACTACTACTAGGTACTGGTATTCTTAATGTTTATACTAatgttatgtataaaatattttgaaaatagatAAAAGATAATtgaatatatgcatatttgtaattatattattttatattattgtaattatatatGTTCTGACTTTCTTTTCTGGGTTTCTCAGAATTTACTGGATATATTTGGTATAGTTtgagtaaaataaaaagtttga

Function

GO:

id name namespace
GO:0032309 icosanoid secretion biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:1903963 arachidonate transport biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0006955 immune response biological_process
GO:1901571 fatty acid derivative transport biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0071715 icosanoid transport biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046717 acid secretion biological_process
GO:0051346 negative regulation of hydrolase activity biological_process
GO:0005764 lysosome cellular_component
GO:0005773 vacuole cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0031672 A band cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034626 True 816 lncRNA 0.44 2 30902538 30906716

Neighbor

gene id symbol gene type direction distance location
XLOC_017417 nhsl1b coding upstream 12718 30725778 ~ 30889820 (+)
XLOC_017416 acbd3 coding upstream 180676 30702531 ~ 30721862 (+)
XLOC_017415 ccr6a coding upstream 288019 30610547 ~ 30614519 (+)
XLOC_017414 fgfr1op coding upstream 292368 30578163 ~ 30610170 (+)
XLOC_017413 myt1la coding upstream 328509 30445971 ~ 30574029 (+)
XLOC_017419 sod2 coding downstream 31218 30937934 ~ 30947547 (+)
XLOC_017420 NA coding downstream 68318 30975034 ~ 30982570 (+)
XLOC_017421 otofa coding downstream 169772 31076488 ~ 31212556 (+)
XLOC_017422 pdia6 coding downstream 310779 31217495 ~ 31231122 (+)
XLOC_017423 apobb.1 coding downstream 363062 31269778 ~ 31285980 (+)
XLOC_017412 NA non-coding upstream 471100 30387024 ~ 30431438 (+)
XLOC_017410 NA non-coding upstream 724323 30167134 ~ 30178215 (+)
XLOC_017409 NA non-coding upstream 818252 30031578 ~ 30084286 (+)
XLOC_017406 BX255963.2 non-coding upstream 1218983 29680929 ~ 29683555 (+)
XLOC_017400 NA non-coding upstream 1633176 29231556 ~ 29269362 (+)
XLOC_017425 BX511244.1 non-coding downstream 480339 31387055 ~ 31387171 (+)
XLOC_017426 BX927258.1 non-coding downstream 815536 31722252 ~ 31723497 (+)
XLOC_017430 BX842669.1 non-coding downstream 1324893 32231609 ~ 32240969 (+)
XLOC_017431 BX927123.1 non-coding downstream 1364191 32270907 ~ 32402360 (+)

Expression


Co-expression Network