RNA id: TCONS_00034626


Basic Information

Item Value
RNA id TCONS_00034626
length 816
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_017418
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30902538 ~ 30906716 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCTCCCAGATGGTCACTTGATCTTCAGACCGGTGTTTTTCCTGCGTGGTGGCTCTCTTTGGACCTGTCTGGCTCTGGTACCAAACCCCAGGGACTGAAGAGATTCAGTGAGAAAGCGTTGAGTGGGGGACACACACAGCATTATCAGGAGCTTGGCATCTCCTCCTGTGGCAGAAATGAGATCAGAGGTCAAACGGATGGTCAGaagaaaaaaaattacaaacaggTTTGGAGTAAATGCGGACAGTCCATGCTCTTACCCACACACTCGCTGCCAGCCAGATCCACCAGCTGCAGTTTGGTCTTAAGGGGCGCCTGTGTGATGCTGGGTCGTGGAGAAGGGCATGGTGAGTGACAGGGTGAGTGGCATGGTGAGGAGGCGGGGCTAGAGGAGCGTGAAGAGGCGGCCCTGCGGCAGCGCGGGCTCCACCACTCTTTTTGAGACACTCGCTGGACGTCCTGTCTGGCATTCTGAAGCCTACGAGCTGCAGCACAGATAGATCACACTGTATGAGTCCTAAAAAAGTCTGTTAAGGTAACAAAATCCCTTGAAACAGGTCAATTGATTTTGCAGCCATCTTGGTTGACCATTATGTACTACTGCCACTACTACTAGGTACTGGTATTCTTAATGTTTATACTAatgttatgtataaaatattttgaaaatagatAAAAGATAATtgaatatatgcatatttgtaattatattattttatattattgtaattatatatGTTCTGACTTTCTTTTCTGGGTTTCTCAGAATTTACTGGATATATTTGGTATAGTTtgagtaaaataaaaagtttga

Function

GO:

id name namespace
GO:0032309 icosanoid secretion biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:1903963 arachidonate transport biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0006955 immune response biological_process
GO:1901571 fatty acid derivative transport biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0071715 icosanoid transport biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046717 acid secretion biological_process
GO:0051346 negative regulation of hydrolase activity biological_process
GO:0005764 lysosome cellular_component
GO:0005773 vacuole cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0031672 A band cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034618 lncRNA upstream 319271 30578967 ~ 30583267 (+) False XLOC_017414
TCONS_00036612 lncRNA upstream 471100 30387024 ~ 30431438 (+) True XLOC_017412
TCONS_00036610 lncRNA upstream 724323 30167134 ~ 30178215 (+) False XLOC_017410
TCONS_00036611 lncRNA upstream 724323 30167242 ~ 30178215 (+) True XLOC_017410
TCONS_00034610 lncRNA upstream 818252 30031578 ~ 30084286 (+) False XLOC_017409
TCONS_00036388 lncRNA downstream 68318 30975034 ~ 30977959 (+) False XLOC_017420
TCONS_00036390 lncRNA downstream 68318 30975034 ~ 30978006 (+) False XLOC_017420
TCONS_00036389 lncRNA downstream 68318 30975034 ~ 30978006 (+) False XLOC_017420
TCONS_00036392 lncRNA downstream 68318 30975034 ~ 30979291 (+) False XLOC_017420
TCONS_00036391 lncRNA downstream 68318 30975034 ~ 30979291 (+) False XLOC_017420
TCONS_00034625 mRNA upstream 12718 30797329 ~ 30889820 (+) True XLOC_017417
TCONS_00034624 mRNA upstream 12816 30725778 ~ 30889722 (+) False XLOC_017417
TCONS_00034623 mRNA upstream 180676 30702531 ~ 30721862 (+) True XLOC_017416
TCONS_00034622 mRNA upstream 288019 30610547 ~ 30614519 (+) True XLOC_017415
TCONS_00034619 mRNA upstream 292368 30578967 ~ 30610170 (+) False XLOC_017414
TCONS_00034630 mRNA downstream 32462 30939178 ~ 30947547 (+) True XLOC_017419
TCONS_00034631 mRNA downstream 169772 31076488 ~ 31212556 (+) False XLOC_017421
TCONS_00034632 mRNA downstream 169822 31076538 ~ 31208474 (+) False XLOC_017421
TCONS_00034633 mRNA downstream 279165 31185881 ~ 31189424 (+) False XLOC_017421
TCONS_00034634 mRNA downstream 299630 31206346 ~ 31208449 (+) True XLOC_017421
TCONS_00034620 other upstream 322847 30579013 ~ 30579691 (+) False XLOC_017414
TCONS_00034614 other upstream 517219 30381098 ~ 30385319 (+) True XLOC_017411
TCONS_00034579 other upstream 2193515 28708907 ~ 28709023 (+) True XLOC_017389
TCONS_00034577 other upstream 2424220 28478203 ~ 28478318 (+) True XLOC_017387
TCONS_00034573 other upstream 2535770 28364742 ~ 28366768 (+) False XLOC_017383
TCONS_00034627 other downstream 31218 30937934 ~ 30943094 (+) False XLOC_017419
TCONS_00034628 other downstream 31446 30938162 ~ 30947545 (+) False XLOC_017419
TCONS_00034629 other downstream 32451 30939167 ~ 30947389 (+) False XLOC_017419
TCONS_00034636 other downstream 310823 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034640 other downstream 480339 31387055 ~ 31387171 (+) True XLOC_017425

Expression Profile

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