RNA id: TCONS_00034636


Basic Information

Item Value
RNA id TCONS_00034636
length 480
RNA type processed_transcript
GC content 0.52
exon number 5
gene id XLOC_017422
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 31217495 ~ 31231122 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAGTTCACGCGGCGCACACAGATCTGCACACCCTGATCATCTGAACCATACATTGAATAAGCACAAAGAATAACCATGCGAGCGCTCCTGGgtGTGGTCACTGCAAGAGTTTGGCTCCCGAATGGAAGAAAGCAGCCACAGCTTTAAAGGGCATTGTGAAGGTGGGCGCTGTGGATGCCGATCAACACAACTCTCTGGGAGGCCAGTATGGAGTCCGAGGCTTTCCGACTATCAAGATCTTTGGAGGCAACAAACACAAGCCAGAGGATTACCAAGGTGGCCGTACAAATCAAGCCATTGTAGACGCAGCTCTGAATGCTCTTCGTTCTCTGGTTAAAGACAGACTTGGTGGAAAGACAGGAGGCTCAGACTACAGCAGACAGAGTGGAGGTGGTGCGGGCAATAAGAAGGATGTGGTGGAGCTGACTGATGATAACTTTGACCGAACCGTGCTGGAGAGCGATGATGTCTGGCTGG

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0016853 isomerase activity molecular_function
GO:0003756 protein disulfide isomerase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-879 Predicted to enable protein disulfide isomerase activity. Predicted to be located in endoplasmic reticulum lumen. Is expressed in several structures, including axis; hatching gland; nervous system; pectoral fin musculature; and polster. Orthologous to human PDIA6 (protein disulfide isomerase family A member 6).

Ensembl:

ensembl_id ENSDART00000153164

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036395 lncRNA upstream 234969 30977338 ~ 30982570 (+) False XLOC_017420
TCONS_00036396 lncRNA upstream 234969 30977348 ~ 30982570 (+) False XLOC_017420
TCONS_00036397 lncRNA upstream 234969 30977505 ~ 30982570 (+) True XLOC_017420
TCONS_00036392 lncRNA upstream 238248 30975034 ~ 30979291 (+) False XLOC_017420
TCONS_00036391 lncRNA upstream 238248 30975034 ~ 30979291 (+) False XLOC_017420
TCONS_00034648 lncRNA downstream 1008582 32231609 ~ 32240969 (+) True XLOC_017430
TCONS_00034649 lncRNA downstream 1047880 32270907 ~ 32402360 (+) True XLOC_017431
TCONS_00034660 lncRNA downstream 1278736 32501763 ~ 32506237 (+) False XLOC_017436
TCONS_00034661 lncRNA downstream 1295182 32518209 ~ 32520467 (+) True XLOC_017436
TCONS_00036613 lncRNA downstream 1604393 32827420 ~ 32850103 (+) True XLOC_017440
TCONS_00034631 mRNA upstream 4983 31076488 ~ 31212556 (+) False XLOC_017421
TCONS_00034632 mRNA upstream 9065 31076538 ~ 31208474 (+) False XLOC_017421
TCONS_00034634 mRNA upstream 9090 31206346 ~ 31208449 (+) True XLOC_017421
TCONS_00034633 mRNA upstream 28115 31185881 ~ 31189424 (+) False XLOC_017421
TCONS_00034630 mRNA upstream 269992 30939178 ~ 30947547 (+) True XLOC_017419
TCONS_00034637 mRNA downstream 46751 31269778 ~ 31284890 (+) False XLOC_017423
TCONS_00034638 mRNA downstream 47734 31270761 ~ 31285980 (+) True XLOC_017423
TCONS_00034639 mRNA downstream 64329 31287356 ~ 31305503 (+) True XLOC_017424
TCONS_00034642 mRNA downstream 762434 31985461 ~ 31990453 (+) True XLOC_017427
TCONS_00034643 mRNA downstream 895532 32118559 ~ 32139062 (+) True XLOC_017428
TCONS_00034628 other upstream 269994 30938162 ~ 30947545 (+) False XLOC_017419
TCONS_00034629 other upstream 270150 30939167 ~ 30947389 (+) False XLOC_017419
TCONS_00034627 other upstream 274445 30937934 ~ 30943094 (+) False XLOC_017419
TCONS_00034620 other upstream 637848 30579013 ~ 30579691 (+) False XLOC_017414
TCONS_00034614 other upstream 832220 30381098 ~ 30385319 (+) True XLOC_017411
TCONS_00034640 other downstream 164028 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034641 other downstream 499225 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034652 other downstream 1185860 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034653 other downstream 1243859 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034740 other downstream 3720344 34943371 ~ 34955260 (+) True XLOC_017481

Expression Profile

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