RNA id: TCONS_00034648



Basic Information


Item Value
RNA id TCONS_00034648
length 678
lncRNA type antisense
GC content 0.46
exon number 4
gene id XLOC_017430
representative True

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32231609 ~ 32240969 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CACCGATATTCTTTGCGCCGTCACTGTCCACGATGTTCTCTCATAGTAGCTTTTATCAATAAATTATCTTGATTGATATGCAGTTAACAAGAAATTAGACGAAAGTGTGGGACTTGCAACGCCAACAAAGACAGCAGTTACACATAAAGACTGGGACAGTTTGCAGAACTTTAGTTTATTGAGATGTGATTTGTGACGTGGCAAAATATGCTGTAAACAACATGAGGACTCTGAAGATGACAGGTTTCCAAACACCCGCGTGGCCTCCAAAACTGCATCCATACTGGAGCCCAGCAAGAGCTTGAGCAGCACTGCGGTGACAGAAGGACAGGCCGGGGGGAGATTACAAAGACAGATGCGACACACAGGATggGATCTCTTTCTCTATTTCAAAAAGGAAACGCACAACCACCTCTTCACCCCTATCAATGCCTCCTTCTGAAACTTCCACATGCAGAACCAAAACCAATCTTGCAGCCTTCACACAATCAAACCGCCGGGCTGCTCAAGTCAAGATCTGTGCACAAGTCTGCAGTCTGGTTGTTCTCATCATTGGAGAGGATGCAGTAACTGTGGGGTCTGTGCCAGTAACTGACGCGGAGAGAACAGCATGTGATTGCAGTGCACAGCAACCAACCTGCATTCATTCAAGTTCAAGGAAGTAAACTTAGCCCGAAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152929

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00036395 lncRNA upstream 1249039 30977338 ~ 30982570 (+) False XLOC_017420
TCONS_00036396 lncRNA upstream 1249039 30977348 ~ 30982570 (+) False XLOC_017420
TCONS_00036397 lncRNA upstream 1249039 30977505 ~ 30982570 (+) True XLOC_017420
TCONS_00036392 lncRNA upstream 1252318 30975034 ~ 30979291 (+) False XLOC_017420
TCONS_00036391 lncRNA upstream 1252318 30975034 ~ 30979291 (+) False XLOC_017420
TCONS_00034649 lncRNA downstream 29938 32270907 ~ 32402360 (+) True XLOC_017431
TCONS_00034660 lncRNA downstream 260794 32501763 ~ 32506237 (+) False XLOC_017436
TCONS_00034661 lncRNA downstream 277240 32518209 ~ 32520467 (+) True XLOC_017436
TCONS_00036613 lncRNA downstream 586451 32827420 ~ 32850103 (+) True XLOC_017440
TCONS_00036614 lncRNA downstream 816815 33057784 ~ 33058544 (+) True XLOC_017441
TCONS_00034646 mRNA upstream 452 32224405 ~ 32231157 (+) False XLOC_017429
TCONS_00034647 mRNA upstream 452 32224406 ~ 32231157 (+) True XLOC_017429
TCONS_00034644 mRNA upstream 2758 32152355 ~ 32228851 (+) False XLOC_017429
TCONS_00034645 mRNA upstream 77802 32152402 ~ 32153807 (+) False XLOC_017429
TCONS_00034643 mRNA upstream 92547 32118559 ~ 32139062 (+) True XLOC_017428
TCONS_00034650 mRNA downstream 165042 32406011 ~ 32432871 (+) False XLOC_017432
TCONS_00034651 mRNA downstream 165116 32406085 ~ 32430380 (+) False XLOC_017432
TCONS_00034654 mRNA downstream 232615 32473584 ~ 32484756 (+) False XLOC_017434
TCONS_00034655 mRNA downstream 237182 32478151 ~ 32491036 (+) False XLOC_017434
TCONS_00034656 mRNA downstream 240379 32481348 ~ 32487625 (+) True XLOC_017434
TCONS_00034641 other upstream 508112 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 844438 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 1008582 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034628 other upstream 1284064 30938162 ~ 30947545 (+) False XLOC_017419
TCONS_00034629 other upstream 1284220 30939167 ~ 30947389 (+) False XLOC_017419
TCONS_00034652 other downstream 167918 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034653 other downstream 225917 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034740 other downstream 2702402 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 2821837 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 3039027 35279996 ~ 35288971 (+) False XLOC_017488

Expression Profile


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