RNA id: TCONS_00034740


Basic Information

Item Value
RNA id TCONS_00034740
length 441
RNA type processed_transcript
GC content 0.40
exon number 3
gene id XLOC_017481
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34913069 ~ 34956230 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGATCGATAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGCTGGATGAGCAGGGAGAGCAACTGGAACGCATCGAGGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAAAATTCTGTGCTGTCTTTCCTTTTCAGTATATCTCAGTATCGTCTTGGTAAAACTGTGTCACTCCACTCGGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACTATGAAGAATGGGAAAAAAGATTTTGCAACCGATACTAATACGACGAGCACTTACAATCAATGTCTTTGGTTCATATCCCTCATCACGACCATAATCAGTTACTGTTTAGACAATGTGCAACTAGATTCTGTAGCTGTAGTAGTAAAAACATTGCATTCCAAGTGATGTGAATTGTGCGTTATGCATGAC

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0007626 locomotory behavior biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0043005 neuron projection cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-468 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Acts upstream of or within locomotory behavior and mitotic cytokinesis. Located in plasma membrane. Is expressed in head; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in Down syndrome and congenital myasthenic syndrome 18. Orthologous to human SNAP25 (synaptosome associated protein 25).

Ensembl:

ensembl_id ENSDART00000137927

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036618 lncRNA upstream 176928 34761743 ~ 34766443 (+) True XLOC_017475
TCONS_00036619 lncRNA upstream 177554 34764450 ~ 34765817 (+) True XLOC_017476
TCONS_00034727 lncRNA upstream 278609 34663322 ~ 34664762 (+) True XLOC_017472
TCONS_00034726 lncRNA upstream 280173 34661555 ~ 34663198 (+) True XLOC_017471
TCONS_00034724 lncRNA upstream 335107 34604947 ~ 34608264 (+) False XLOC_017470
TCONS_00036621 lncRNA downstream 6894 34962154 ~ 34965993 (+) True XLOC_017482
TCONS_00034741 lncRNA downstream 29863 34985123 ~ 34985782 (+) True XLOC_017483
TCONS_00036622 lncRNA downstream 57374 35012634 ~ 35014502 (+) True XLOC_017484
TCONS_00034746 lncRNA downstream 220567 35175827 ~ 35177842 (+) True XLOC_017486
TCONS_00034755 lncRNA downstream 324736 35279996 ~ 35283418 (+) False XLOC_017488
TCONS_00034735 mRNA upstream 41166 34868933 ~ 34902205 (+) False XLOC_017480
TCONS_00034736 mRNA upstream 57269 34870517 ~ 34886102 (+) True XLOC_017480
TCONS_00034733 mRNA upstream 78340 34845672 ~ 34865031 (+) False XLOC_017479
TCONS_00034734 mRNA upstream 78852 34845997 ~ 34864519 (+) True XLOC_017479
TCONS_00034732 mRNA upstream 148906 34792166 ~ 34794465 (+) True XLOC_017478
TCONS_00034742 mRNA downstream 103374 35058634 ~ 35070476 (+) False XLOC_017485
TCONS_00034744 mRNA downstream 129964 35085224 ~ 35206280 (+) False XLOC_017486
TCONS_00034745 mRNA downstream 130982 35086242 ~ 35125014 (+) False XLOC_017486
TCONS_00034747 mRNA downstream 252760 35208020 ~ 35252136 (+) False XLOC_017487
TCONS_00034748 mRNA downstream 252808 35208068 ~ 35254641 (+) False XLOC_017487
TCONS_00034653 other upstream 2472917 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2510904 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 3219874 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 3556200 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 3720344 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034743 other downstream 107546 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 324736 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 427178 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 467438 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034779 other downstream 1324788 36280048 ~ 36280164 (+) True XLOC_017499

Expression Profile

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