XLOC_017487 (fbxo16)


Basic Information

Item Value
gene id XLOC_017487
gene name fbxo16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35208020 ~ 35254641 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034747
GTTTACGCTTCATCCTCACATTATTAATGATGACGAGTCTGTAATGTTACTATCAAGTTTCTCCTGAAAGCACTTCTTGACTTATTGAGATTTACGGAGGAATAACTGAATGGAACTGATCCTCAAACGTCTGAACTTCAATGAGAAAAGATGCCTAAAGCACCCAGCACAAAAATGCAGACTAAACTAAGTACCTGGACACCTCTAAATCACCAGCTCTCCAATGCTCATGTTTTTGAAGAGAGAAGAAATCTACTTGGAAAGTGGTTTGAGAAATGGACGGATAGTCAGCGGAAGCAGGTGCTACAAGATTTTTTCTCTAGATGTTCTGCCGGCCAGCTGAAACATCTCAGACAGACTCTGAGCAGCTGGGTACCAGAAGAAACCCTCGACTTCACCACGGTCCTTCCCAGGGTCATTtctctatatatattttcatatctAGACCCCAGGAGTCTCTGCAGATGCGCTCAGGTGAGCTGGCATTGGAAAAACCTGGTGGAGCTTGACCAGCTGTGGATGCCTAAATGTCTGAAACTCGGCTGGTGCATAACCTTTACTCCGACACCATTTGAGCAAGGCGTATGGAAGAGGCAATACATAGAGACAGTACAAGAGCTTCACATTAGCAGGCCTAAGGTGCCTGTGAAGGAAGAGTTCATTGTCCCTGATGTGAAAGTCATTGGCAGTGAGACAGAAGGGTCACTTCCTCTGACCGGTCACAGGGATCTTTTGGGTCTGCATGGGAGGAGTAAAAATGGGAATGACTTGGGGAAATCAGCCAAAGGTCTTCCTCCATGGAGAGACTCAGACAGGCATCC
>TCONS_00034748
ACTATCAAGTTTCTCCTGAAAGCACTTCTTGACTTATTGAGCTTTTCTCAACTCCTTTAACTGAATTATGTAAAAGATCCGACTCAGTTGAACAATTCAGTCGTGAATTGAGCATCGACAGCGTTTGGAAAGAGGCGGGACAGAGTGTGATTGCTATGGAGACTAGTAAACTGAACCGAGCCGGAGGACCAAAAACATCAGTATCGAGTCACTAAACATTTTAGTGTAATGTTTTCGTTATGATGGCTAGCATTATTCATTCGTGTTGACACTGCTGTACATGATTTACGGAGGAATAACTGAATGGAACTGATCCTCAAACGTCTGAACTTCAATGAGAAAAGATGCCTAAAGCACCCAGCACAAAAATGCAGACTAAACTAAGTACCTGGACACCTCTAAATCACCAGCTCTCCAATGCTCATGTTTTTGAAGAGAGAAGAAATCTACTTGGAAAGTGGTTTGAGAAATGGACGGATAGTCAGCGGAAGCAGGTGCTACAAGATTTTTTCTCTAGATGTTCTGCCGGCCAGCTGAAACATCTCAGACAGACTCTGAGCAGCTGGGTACCAGAAGAAACCCTCGACTTCACCACGGTCCTTCCCAGGGTCATTtctctatatatattttcatatctAGACCCCAGGAGTCTCTGCAGATGCGCTCAGGTGAGCTGGCATTGGAAAAACCTGGTGGAGCTTGACCAGCTGTGGATGCCTAAATGTCTGAAACTCGGCTGGTGCATAACCTTTACTCCGACACCATTTGAGCAAGGCGTATGGAAGAGGCAATACATAGAGACAGTACAAGAGCTTCACATTAGCAGGCCTAAGGTGCCTGTGAAGGAAGAGTTCATTGTCCCTGATGTGAAAGTCATTGGCAGTGAGACAGAAGGGTCACTTCCTCTGACCGGTCACAGGGATCTTTTGGGTCTGCATGGGAGGAGTAAAAATGGGAATGACTTGGGGAAATCAGCCAAAGGTCTTCCTCCATGGAGAGACTCAGACAGGCATCCTACTGACACCATACGCTTTAACTATCTGGATAATCTCCACCCGGGTGAACATGCAAGAAAAGCGCTCTTAAAGACAAGGCAAGAAGATACTATTAAAGCACCATCTCACTCAACATACAAGCTGCGCAAGGCCAAATCATTGATGTTTTTATCCCTGGATCTCAGTAAGGCGGGAAAGCCAAGCCATAACAGGCCGAAATGGGCAGCACGGAATTTGGAAGCACTTCCGGCTGACAAGGACTCCATAAAGAGAATTTCCCAGACGTCCCAGTGGAATGCAGGGATACGTCCTGGTCCTGTGAGGCCTCCAGTGCCTAGACTGAGTAAAGAGGGGTTCCGTGCATCACAGAGATCCCATAGAAGCACACCAACTGTGACTCTTTTTGAAGGACAACCATGAAGGAGACAGACATGTGAAGAATCAAATGAAGAGTTGGGACATCTGCTGGATCATGTTGTGATTGCAACATGAATGATTGTTTAGTTTAGAGTTGAATTATTATCATGTCTTTATGGTGAGACAGTGCAGGCATTTTTTCATACACCTTTTAGTTGTGagattttgaatgtttttttttactcttaaggAAAAACATACAAACGACAGTTTTAAAGTATTTATCGATATTTATCAGTAGATTCAGTTCgtaatttttatttacagtatgtacttttttatttacatcgaTTCATAAATCACCATTTCAGGAGCACTTCAGTTTACTTCAAATCTGTATACTGAAGATTATCACAGAGGGTTATGTTCATATGCAATATGCCTGattatgtataatatttattgtgcaaaagacttttattaaaaAGATTCTCAAAATCTAATCTTTAAAAA
>TCONS_00034749
AGCTTTTCTCAACTCCTTTAACTGAATTATGTAAAAGATCCGACTCAGTTGAACAATTCAGTCGTGAATTGAGCATCGACAGCGTTTGGAAAGAGGCGGGACAGAGTGTGATTGCTATGGAGACTAGTAAACTGAACCGAGCCGGAGGACCAAAAACATCAGTATCGAGTCACTAAACATTTTAGTGTAATGTTTTCGTTATGATGGCTAGCATTATTCATTCGTGTTGACACTGCTGTACATGATTTACGGAGGAATAACTGAATGGAACTGATCCTCAAACGTCTGAACTTCAATGAGAAAAGATGCCTAAAGCACCCAGCACAAAAATGCAGACTAAACTAAGTACCTGGACACCTCTAAATCACCAGCTCTCCAATGCTCATGTTTTTGAAGAGAGAAGAAATCTACTTGGAAAGTGGTTTGAGAAATGGACGGATAGTCAGCGGAAGCAGGTGCTACAAGATTTTTTCTCTAGATGTTCTGCCGGCCAGCTGAAACATCTCAGACAGACTCTGAGCAGCTGGGTACCAGAAGAAACCCTCGACTTCACCACGGTCCTTCCCAGGGTCATTtctctatatatattttcatatctAGACCCCAGGAGTCTCTGCAGATGCGCTCAGGTGAGCTGGCATTGGAAAAACCTGGTGGAGCTTGACCAGCTGTGGATGCCTAAATGTCTGAAACTCGGCTGGTGCATAACCTTTACTCCGACACCATTTGAGCAAGGCGTATGGAAGAGGCAATACATAGAGACAGTACAAGAGCTTCACATTAGCAGGCCTAAGGTGCCTGTGAAGGAAGAGTTCATTGTCCCTGATGTGAAAGTCATTGGCAGTGAGACAGAAGGGTCACTTCCTCTGACCGGTCACAGGGATCTTTTGGGTCTGCATGGGAGGAGTAAAAATGGGAATGACTTGGGGAAATCAGCCAAAGGTCTTCCTCCATGGAGAGACTCAGACAGGCATCCTACTGACACCATACGCTTTAACTATCTGGATAATCTCCACCCGGGTGAACATGCAAGAAAAGCGCTCTTAAAGACAAGGCAAGAAGATACTATTAAAGCACCATCTCACTCAACATACAAGCTGCGCAAGGCCAAATCATTGATGTTTTTATCCCTGGATCTCAGTAAGGCGGGAAAGCCAAGCCATAACAGGCCGAAATGGGCAGCACGGAATTTGGAAGCACTTCCGGCTGACAAGGACTCCATAAAGAGAATTTCCCAGACGTCCCAGTGGAATGCAGGGATACGTCCTGGTCCTGTGAGGCCTCCAGTGCCTAGACTGAGTAAAGAGGGGTTCCGTGCATCACAGAGATCCCATAGAAGCACACCAACTGTGACTCTTTTTGAAGGACAACCATGAAGGAGACAGACATGTGAAGAATCAAATGAAGAGTTGGGACATCTGCTGGATCATGTTGTGATTGCAACATGAATGATTGTTTAGTTTAGAGTTGAATTATTATCATGTCTTTATGGTGAGACAGTGCAGGCATTTTTTCATACACCTTTTAGTTGTGagattttgaatgtttttttttactcttaaggAAAAACATACAAACGACAGTTTTAAAGTATTTATCGATATTTATCAGTAGATTCAGTTCgtaatttttatttacagtatgtacttttttatttacatcgaTTCATAAATCACCATTTCAGGAGCACTTCAGTTTACTTCAAATCTGTATACTGAAGATTATCACAGAGGGTTATGTTCATATGCAATATGCCTGattatgtataatatttattgtgcaaaagacttttattaaaaAGATTCTCAAAATCTA
>TCONS_00034750
AGAAAAGATGCCTAAAGCACCCAGCACAAAAATGCAGACTAAACTAAGTACCTGGACACCTCTAAATCACCAGCTCTCCAATGCTCATGTTTTTGAAGAGAGAAGAAATCTACTTGGAAAGTGGTTTGAGAAATGGACGGATAGTCAGCGGAAGCAGGTGCTACAAGATTTTTTCTCTAGATGTTCTGCCGGCCAGCTGAAACATCTCAGACAGACTCTGAGCAGCTGGGTACCAGAAGAAACCCTCGACTTCACCACGGTCCTTCCCAGGGTCATTtctctatatatattttcatatctAGACCCCAGGAGTCTCTGCAGATGCGCTCAGGTGAGCTGGCATTGGAAAAACCTGGTGGAGCTTGACCAGCTGTGGATGCCTAAATGTCTGAAACTCGGCTGGTGCATAACCTTTACTCCGACACCATTTGAGCAAGGCGTATGGAAGAGGCAATACATAGAGACAGTACAAGAGCTTCACATTAGCAGGCCTAAGGTGCCTGTGAAGGAAGAGTTCATTGTCCCTGATGTGAAAGTCATTGGCAGTGAGACAGAAGGGTCACTTCCTCTGACCGGTCACAGGGATCTTTTGGGTCTGCATGGGAGGAGTAAAAATGGGAATGACTTGGGGAAATCAGCCAAAGGTCTTCCTCCATGGAGAGACTCAGACAGGCATCCTACTGACACCATACGCTTTAACTATCTGGATAATCTCCACCCGGGTGAACATGCAAGAAAAGCGCTCTTAAAGACAAGGCAAGAAGATACTATTAAAGCACCATCTCACTCAACATACAAGCTGCGCAAGGCCAAATCATTGATGTTTTTATCCCTGGATCTCAGTAAGGCGGGAAAGCCAAGCCATAACAGGCCGAAATGGGCAGCACGGAATTTGGAAGCACTTCCGGCTGACAAGGACTCCATAAAGAGAATTTCCCAGACGTCCCAGTGGAATGCAGGGATACGTCCTGGTCCTGTGAGGCCTCCAGTGCCTAGACTGAGTAAAGAGGGGTTCCGTGCATCACAGAGATCCCATAGAAGCACACCAACTGTGACTCTTTTTGAAGGACAACCATGA

Function

symbol description
fbxo16 Is expressed in Kupffer's vesicle; hypothalamus; neural tube; and spinal cord. Orthologous to human FBXO16 (F-box protein 16).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041015-747 Is expressed in Kupffer's vesicle; hypothalamus; neural tube; and spinal cord. Orthologous to human FBXO16 (F-box protein 16).

Ensembl:

ensembl_id ENSDARG00000033949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034747 False 821 mRNA 0.46 6 35208020 35252136
TCONS_00034748 False 1865 mRNA 0.42 10 35208068 35254641
TCONS_00034749 False 1815 mRNA 0.42 9 35247410 35254630
TCONS_00034750 True 1078 mRNA 0.48 8 35247854 35254191

Neighbor

gene id symbol gene type direction distance location
XLOC_017486 cdc42bpab coding upstream 1740 35085224 ~ 35206280 (+)
XLOC_017485 hnrnpub coding upstream 137544 35058634 ~ 35070476 (+)
XLOC_017484 NA coding upstream 193518 35012634 ~ 35014502 (+)
XLOC_017483 BX470246.1 coding upstream 222238 34985123 ~ 34985782 (+)
XLOC_017482 NA coding upstream 242027 34962154 ~ 34965993 (+)
XLOC_017488 fam49a coding downstream 762 35255403 ~ 35298023 (+)
XLOC_017489 BX511024.1 coding downstream 127797 35382438 ~ 35429737 (+)
XLOC_017490 BX510920.1 coding downstream 168057 35422698 ~ 35422827 (+)
XLOC_017491 sf3b6 coding downstream 178551 35433192 ~ 35437940 (+)
XLOC_017492 tdrd6 coding downstream 183659 35438300 ~ 35462226 (+)
XLOC_017475 NA non-coding upstream 441577 34761743 ~ 34766443 (+)
XLOC_017495 NA non-coding downstream 457961 35712602 ~ 35827205 (+)
XLOC_017496 NA non-coding downstream 602758 35857399 ~ 35980452 (+)
XLOC_017499 BX000468.1 non-coding downstream 1025407 36280048 ~ 36280164 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_10348845_10351323 FBXO16 coding CI01000325 null 10348845 ~ 10351428 (+)