XLOC_017489 (BX511024.1)


Basic Information

Item Value
gene id XLOC_017489
gene name BX511024.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35382438 ~ 35429737 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034760
ACACACCAGCTCGAGCATTGCGCTGCGCCGCGCGTGGACTCTCCTCGCTGCAGTGATCGCTGCGTCTCTCCTTTCACCCCAAAAGAAACCTCGCCGCAGCTGGCAACCGATTAGAGAGCACTTACATCGCGTCTACCCTAGGAGCAGGAATCCTCACACCTTGTTTGGCTCTCCTTTTCG
>TCONS_00034761
TCGCTGCAGTGATCGCTGCGTCTCTCCTTTCACCCCAAAAGAAACCTCGCCGCAGCTGGCAACCGATTAGAGAGCACTTACATCGCGTCTACCCTAGGAGCAGGAATCCTCACACCTTGTTTGGCTCTCCTTTTCGACACCATGGGGAAACAGAACAGCAAGCTGACCCCTGAGGTAATGGAAGACCTGGTGAAGAACACAGAATTTAATGAACACGAACTCAAACAGTGGTACAAAGGCTTCCTGAAGGACTGCCCCACCGGCCGACTCAACCTAGACGAGTTCCAGCAGCTCTATGTCAAGTTTTTCCCTTACGGTGATGCCTCAAAGTTTGCTCAGCATGCTTTCAGAACCTTTGACAAGAATGGCGATGGCACCATCGACTTCAGAGAGTTCATCTGTGCTCTGTCCATCACATCACGAGGCAGCTTCGAACAGAAGCTCAACTGGGCCTTTAACATGTATGACCTGGATGGAGATGGCAAAATCACACGAGTCGAGATGCTTGAGATCATTGAGGCAATCTACAAGATGGTGGGGACTGTTATCATGATGAAGATGAATGAGGACGGCCTGACGCCCGAGCAGAGGGTTGACAAAATCTTCAGTAAGATGGATAAGAACAACGACGACCAGATCTCATTGGAAGAGTTCAAAGAAGCAGCAAAGAGTGACCCGTCCATTGTATTACTGCTGCAGTGTGACCTGCAGAAATGAGCGTCTCGGAAAAGAGCCAGGGACTGCACAAATGATTAATGTTCCATTCAGTTTGCAGCTATTTCcactgataaaaaaaattgcttgGACTACCTTTCAATGAATCCGCTTCCTGTGTTTGAAACACTTGTGTGCATGAGAATGTTCTTTGCTAACGaatttcacactcacacactgatACAATCACAGTTACACACATATTacaaatgcatacacacatacagaccaTGCCATGCACaaatagaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagagttgtTGAAATTAACTGCCAAAATGTGAAGAGTGTGCAAAGTACTTTCTGAATCCACTGGAGCTTGCGCATCATTGATGTGCTGTATTAAATCGAGCTACTATTTATTGTACTGATGCTAGCTATGTGTAACATATACTGCGTAACTTCAACAGAACCGATTCTTATGGTAATCATAACTGTTTTACCCAGATTTACCTACTCATCTGGATGGACAAAAAGATAAGCTCAGGTCCATCACATTTTTCCCCTTTAAATGTGTTTGTACTGTTGGTGAATATAAATGTAGTTTATTTGCATGCCATTAGGTTTGCCTTAAGAGAACGTCCCTCATTTGCATCCTGCATAACGAATGAAAATAAGCCttatttaaaagaacaaaaagctattaaaaatgttaaaaaattaaattagaacAAAGATTTAAGAtctgtaaagggatagttcacccaaaaatcaaaatatgctgtttttttatagCTGAAATGGTGATTCGTAAAATGAAAATCAATGTACTGAcacttcattaattcattttttatggcttagtcgctttatttattagggttcaccacagtggaatgaacgccaacttatccagcatatgttttacacagcggatgcccttccggctgcaactcagtactaggaaacacccgtTCACTCttacatacacactcaaacactaagaccaatttagtttatttaattcacctacagcgcttgtctttggactgtgggggaaactgaagcacccggaggaaacccacatgaaccacctgagactcgaaccagcaaccttcttgctgtgaggcgacagtgctaaccactgaggcactgtGTCGCCCTCTACTGACACTTTTAGAGTGAATAAAGCAACAACTTTAGCTGCTGCTAATAGACTGTGGCCTGTacaaaaactgaacattatttattacattattacccATAATGCACCGCCTCTGTACATGATCATAAGCACATTTATAGCAGTGTGGAGTGTGAGCTTATAACAACTTAATTATGTTTCTAAAAAAAGTAGCTAAaggttttatatgtttttttttttgactctcaaagtggctacaaactacttatttgcattttatgaatcatcaaGTGGTggcgcggtggctcagtgattagcactgtcgatGCACAGTTAGTAGGTTGCTGGTTAGAgaaccaaagacatgcggtataggtaaattgggtaaacaaaattggccatagtgtatgtgtgtgtgaatgagtgtgtgtatggatgtttcctagagttGTGTTGCGGCTGGCAGGGCATGCACTGCTTAAATTATTGCCGAAAtaattggctgttcattccgctgtggcggcttCTGATAtaaaaaagactaagccgaagaaaaatgaatgaatgaataaatgaatcaacaaaTACCATAGTTATACTGAGAAAAGCCACCTACATTTTGGATGGACTGAGATCATTTGTGTAATTTAACAGTATATTACAATTTttcagtgaactatccctttaaatgtgtgCAATGCATTGATGGGAAACGCTAGAATACTACACCTTCTATAGCATGTACATCACATGAGGGAGGCTGAATGTAATTTGTGAGAACAATTACACAACTGAAACCATactttttattatcattgttgaaaTATTACAATATTCCCAGATTAAACCTACAAGCTGTGCAGTTTCAGAATGTCATCAATTGAAATGATTTGCATATCAGTGTGCAGATTCATGTGGGGGCCGAGGGTGAAATGAATTTAAGACCATTTTGAGATGTAATCTTGCCTCAAAGTTGTATCTGTTTTAACTCCCACCTTAAAACCTCCAAGACTGTATTTAATCATACATTTTACATGCTACTCTTAAAGAAGAATTGTTTTAAAGGCTAATCCTGAGGTTAGTAGTTTTTAAGTCCAGGCATTTGCACCAACTGCGCATTTTGAGCACTGACCCGATTTCTAAATATGCACATTTCTGTGCTCCATTTAAAAGTACGTTCTGCCAGTGTCAAGAGCTTTACACAAGCATAACCTTTGTCATTGTAATGTTTACCTATTTAGGCACCGCACCAAATTCATGCAATGGCAAACTTTTCCAATTTCCAAGTTATTTTGTACATGTAGCATGTATTGTGCCCCTGATGCCATGGCTGCACTACTCCTTGTGTTGTGGTTTAAACTAATAAAAGAGTATAAGGGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-211 Predicted to enable calcium ion binding activity. Orthologous to human VSNL1 (visinin like 1).

Ensembl:

ensembl_id ENSDARG00000023228 ENSDARG00000104812

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034760 False 180 processed_transcript 0.58 1 35382438 35382617
TCONS_00034761 True 3234 mRNA 0.39 4 35382482 35429737

Neighbor

gene id symbol gene type direction distance location
XLOC_017488 fam49a coding upstream 84415 35255403 ~ 35298023 (+)
XLOC_017487 fbxo16 coding upstream 127797 35208020 ~ 35254641 (+)
XLOC_017486 cdc42bpab coding upstream 176158 35085224 ~ 35206280 (+)
XLOC_017485 hnrnpub coding upstream 311962 35058634 ~ 35070476 (+)
XLOC_017484 NA coding upstream 367936 35012634 ~ 35014502 (+)
XLOC_017491 sf3b6 coding downstream 3455 35433192 ~ 35437940 (+)
XLOC_017492 tdrd6 coding downstream 8563 35438300 ~ 35462226 (+)
XLOC_017493 mep1a.1 coding downstream 43551 35473288 ~ 35481584 (+)
XLOC_017494 mep1a.2 coding downstream 54333 35484070 ~ 35496459 (+)
XLOC_017495 NA coding downstream 282865 35712602 ~ 35827205 (+)
XLOC_017483 BX470246.1 non-coding upstream 396656 34985123 ~ 34985782 (+)
XLOC_017482 NA non-coding upstream 416445 34962154 ~ 34965993 (+)
XLOC_017475 NA non-coding upstream 615995 34761743 ~ 34766443 (+)
XLOC_017496 NA non-coding downstream 427662 35857399 ~ 35980452 (+)
XLOC_017499 BX000468.1 non-coding downstream 850311 36280048 ~ 36280164 (+)
XLOC_017500 NA non-coding downstream 873060 36302797 ~ 36304106 (+)
XLOC_017504 NA non-coding downstream 1285166 36714903 ~ 36715819 (+)
XLOC_017476 NA non-coding upstream 616621 34764450 ~ 34765817 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G468876 NA non-coding CI01000325 null 10435268 ~ 10469485 (-)
bowfin (Amia calva) AMCG00004207 vsnl1,LOC105894450,LOC103457788,LOC103023468,LOC103027217,LOC108440966 coding CM030121.1 CM030121.1 37608021 ~ 37632390 (-)