XLOC_017493 (mep1a.1)


Basic Information

Item Value
gene id XLOC_017493
gene name mep1a.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35473288 ~ 35481584 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034768
ATTTTGTACCTCTCATATCGACAGTATGCTTTTACAGAGACTGCTCATCTTCGCAGTGCTGGCTGCAGTACTTCATGCTGTTCCACTTTCAAGTCGTGTTCATGAGGTTGAAGATGAACCCAATTTTAACCCTTTCATCAATCTTGGAGCAAAAACCCGGCTGATTGAGGGAGACATAGCCTTACCTCCAGGTCGAATTGGTCTTATCAACACAACATACAGATGGAAGTTCCCTATTCCTTACATTCTGTCTGACAGTCTGGACCTTAACGCAAAAGGTGCAATCTATCAGGCATTTGAAGTGTACCGTCTAAAGTCATGTGTTGATTTCAAACCCTATGAGGGAGAGAAGACATACATCAAATTTGAGAAAGGAGATGGGTGTTGGTCTTTTGTTGGAGATCAACAGAACGGACAAGTTCTTTCTCTGGGGCCCGGCTGTGATCATAAGGCTGTGATTGAGCATGAACTGCTGCACGCCTTGGGCTTTTACCACATGCAGTCTCGCCAGGACCGAGACGACTATGTGAAGATCTGGCTTGATCAGGTCATTGAAGGCTTGGAGCATAATTTTAACAAATATGATGACAGTTTTGTCACAGACCTAAACACACCATATGACTACGAGTCTGTTATGCATTATCGTCCATTTGCTTTCAACAAAGACCCCTCTATTCCTACTATTACCACCAACATCCCAGAGTTCTACAAAATCATCGGACAATACCTGGACTTCAGTGAGATGGATATTGTCAGACTGAATCGAATGTACAACTGCTCCTCTTCTCTTACCCTGCTGGACCAGTGTGCTTTTGAAAAGATCAACATCTGTGGGATGGTACAGAGTTCGACTGATGATGGCGATTGGGTCCATCTTAAGAGCTCTGAGGATCATACTCTCAGCGGACAATGCAGAGATTTAGGATATACTATGCACTTTGACACGTCCAGTGGACAGGCAGAGAGATCTGCTCTAATCGAGTCCCGCATCCTATATCCAAAAAGGAAGCTGCAGTGCCTACAGTTTTTCTACAAAATGACGGGGAGTGCAAAGGACAGGCTAGTGATTTGGGCCAGGATGGATGATGGAACGGGAGAAGTGCGTAAATTAAAGAAACTGCAAACAATCTGGGCTGATGAAGACAAAACATGGAAGATTGCCCATGTGCCGATGCAAGTTGGGGCAAAATTCCGCTATGCATTCCAAGCAGTGAAAGGTGATTCGAGCAGCTCTGGAGGAGGTATATTCATAGATGACATCAGCCTAACAGAGACACACTGTCCAGCCGCTGTCTGGCGCATCCAAAACTTCTCCAGTATCCTTGAAAAGGCAGACTACAGCACTGTGCTGAACAGCCCTCGTTTCTACAGCCCTGAGGGTTATGGTTTTGGGATTCAAGTGATTCCACTGTCTGGCTATTCTGATTATGCTGGTAACTACACTGGTCTGTACTTCCATTTGATCAGTGGTGACAATGACATTGTGATGCAGTGGCCTGCTGTGAACCGCCAGGCCACTATAGTGGTGATGGACCAAGATCCGGATATTAGGTTGAGGATGTCTTCTGCTCGTAGCCTCACCACTGACCTGAGCAAAGGAAATGGAGAACAACTATTGTGGGACAATCCAAAAAAGGTTGGGACCCTTGACCCAAGCGATGGTTTTTGGCGAGGACCATCAAAGGGATGGAATACTTTCATAAAGCACTACGATTTACACAGACGAAATTACCTGAAAAATGATGACCTCATCATCTTTGTTGACTTTGAAGACTTAACAAGCCTGATAAAGAGTGAGGTTCCGACTGCCCCAAAGGTTTGAGGAAAAAAAGACTGTGTCGCACTTTAAAGTCTGAAGAGCTGTGTGGATTGTGGAGAACATCTTAAATATGTTAATGATGGAAGTAATACTGTGCTACTGAAACAGTGTTTTAGATATTCTGCtacttttgaaacattttaataaagtcGTCAATTGCCAAA
>TCONS_00036624
TCGACAGTATGCTTTTACAGAGACTGCTCATCTTCGCAGTGCTGGCTGCAGTACTTCATGCTGTTCCACTTTCAAGTCGTGTTCATGAGGTTGAAGATGAACCCAATTTTAACCCTTTCATCAATCTTGGAGCAAAAACCCGGCTGATTGAGGGAGACATAGCCTTACCTCCAGGTCGAATTGGTCTTATCAACACAACATACAGATGGAAGTTCCCTATTCCTTACATTCTGTCTGACAGTCTGGACCTTAACGCAAAAGGTGCAATCTATCAGGCATTTGAAGTGTACCGTCTAAAGTCATGTGTTGATTTCAAACCCTATGAGGGAGAGAAGACATACATCAAATTTGAGAAAGGAGATGGGTGTTGGTCTTTTGTTGGAGATCAACAGAACGGACAAGTTCTTTCTCTGGGGCCCGGCTGTGATCATAAGGCTGTGATTGAGCATGAACTGCTGCACGCCTTGGGCTTTTACCACATGCAGTCTCGCCAGGACCGAGACGACTATGTGAAGATCTGGCTTGATCAGGTCATTGAAGGCTTGGAGCATAATTTTAACAAATATGATGACAGTTTTGTCACAGACCTAAACACACCATATGACTACGAGTCTGTTATGCATTATCGTCCATTTGCTTTCAACAAAGACCCCTCTATTCCTACTATTACCACCAACATCCCAGAGTTCTACAAAATCATCGGACAATACCTGGACTTCAGTGAGATGGATATTGTCAGACTGAATCGAATGTACAACTGCTCCTCTTCTCTTACCCTGCTGGACCAGTGTGCTTTTGAAAAGATCAACATCTGTGGGATGGTACAGAGTTCGACTGATGATGGCGATTGGGTCCATCTTAAGAGCTCTGAGGATCATACTCTCAGCGGACAATGCAGAGATTTAGGATATACTATGCACTTTGACACGTCCAGTGGACAGGCAGAGAGATCTGCTCTAATCGAGTCCCGCATCCTATATCCAAAAAGGAAGCTGCAGTGCCTACAGTTTTTCTACAAAATGACGGGGAGTGCAAAGGACAGGCTAGTGATTTGGGCCAGGATGGATGATGGAACGGGAGAAGTGCGTAAATTAAAGAAACTGCAAACAATCTGGGCTGATGAAGACAAAACATGGAAGATTGCCCATGTGCCGATGCAAGTTGGGGCAAAATTCCGCTATGCATTCCAAGCAGTGAAAGGTGATTCGAGCAGCTCTGGAGGAGGTATATTCATAGATGACATCAGCCTAACAGAGACACACTGTCCAGCCGCTGTCTGGCGCATCCAAAACTTCTCCAGTATCCTTGAAAAGGCAGACTACAGCACTGTGCTGAACAGCCCTCGTTTCTACAGCCCTGAGGGTTATGGTTTTGGGATTCAAGTGATTCCACTGTCTGGCTATTCTGATTATGCTGGTAACTACACTGGTCTGTACTTCCATTTGATCAGTGGTGACAATGACATTGTGATGCAGTGGCCTGCTGTGAACCGCCAGGCCACTATAGTGGTGATGGACCAAGATCCGGATATTAGGTTGAGGATGTCTTCTGCTCGTAGCCTCACCACTGACCTGAGCAAAGGAAATGGAGAACAACTATTGTGGGACAATCCAAAAAAGGTTGGGACCCTTGACCCAAGCGATGGTTTTTGGCGAGGACCATCAAAGGGATGGAATACTTTCATAAAGCACTACGATTTACACAGACGAAATTACCTGAAAAATGATGACCTCATCATCTTTGTTGACTTTGAAGACTTAACAAGCCTGATAAAGAGTGAGGTTCCGACTGCCCCAAAGGTTTGAGGAAAAAAAGACTGTAAGTTGGCTGATTTAGAGTAAATACAACAttaaaatacacaactattatttttttaatagttatcaGATTGAAAGGATTGATCACTCCAAACCAAACATTCTTACTATTTAATCCCTTTtaatctttcttcaaaatgtcaacagaaaaaaaaataactcaaaacatatttgaaacaagtgaaggtgagtaaataatgtgtAAACGTTTtgtttgtgggtgaactatccctttacccTCCTTTTTATCAGGGCTTAATTTGGATGTAAACATTAGTTAAATTACACACAGTATTATATTTGACAAAATGTTTGAGATAATTCATTTTGATTCATTACTTTGTATTTCTCTAAACAGGTGTCGCACTTTAAAGTCTGAAGAGCTGTGTGGATTGTGGAGAACATCTTAAATATGTTAATGATGGAAGTAATACTGTGCTACTGAAACAGTGTTTTAGATATTCTGCtacttttgaaacattttaataaagtcGTCAATTGCCAAA
>TCONS_00034769
CATCAAAGGGATGGAATACTTTCATAAAGCACTACGATTTACACAGACGAAATTACCTGAAAAATGATGACCTCATCATCTTTGTTGACTTTGAAGACTTAACAAGCCTGATAAAGAGTGAGGTTCCGACTGCCCCAAAGGTTTGAGGAAAAAAAGACTGTAAGTTGGCTGATTTAGAGTAAATACAACAttaaaatacacaactattatttttttaatagttatcaGATTGAAAGGATTGATCACTCCAAACCAAACATTCTTACTATTTAATCCCTTTtaatctttcttcaaaatgtcaacagaaaaaaaaataactcaaaacatatttgaaacaagtgaaggtgagtaaataatgtgtAAACGTTTtgtttgtgggtgaactatccctttacccTCCTTTTTATCAGGGCTTAATTTGGATGTAAACATTAGTTAAATTACACACAGTATTATATTTGACAAAATGTTTGAGATAATTCATTTTGATTCATTACTTTGTATTTCTCTAAACAGGTGTCGCACTTTAAAGTCTGAAGAGCTGTGTGGATTGTGGAGAACATCTTAAATATGTTAATGATGGAAGTAATACTGTGCTACTGAAACAGTGTTTTAGATATTCTGCtacttttgaaacattttaataaagtcGTCAATTGCCAAA

Function

symbol description
mep1a.1 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brush border epithelial cell; digestive system; epidermis; gill; and heart. Orthologous to human MEP1A (meprin A subunit alpha).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-209 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brush border epithelial cell; digestive system; epidermis; gill; and heart. Orthologous to human MEP1A (meprin A subunit alpha).

Ensembl:

ensembl_id ENSDARG00000029747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034768 False 1983 mRNA 0.44 14 35473288 35481584
TCONS_00036624 False 2323 lncRNA 0.42 13 35473305 35481584
TCONS_00034769 True 664 lncRNA 0.31 2 35480779 35481584

Neighbor

gene id symbol gene type direction distance location
XLOC_017492 tdrd6 coding upstream 11062 35438300 ~ 35462226 (+)
XLOC_017491 sf3b6 coding upstream 35348 35433192 ~ 35437940 (+)
XLOC_017489 BX511024.1 coding upstream 43551 35382438 ~ 35429737 (+)
XLOC_017490 BX510920.1 coding upstream 50461 35422698 ~ 35422827 (+)
XLOC_017488 fam49a coding upstream 175265 35255403 ~ 35298023 (+)
XLOC_017494 mep1a.2 coding downstream 2486 35484070 ~ 35496459 (+)
XLOC_017495 NA coding downstream 231018 35712602 ~ 35827205 (+)
XLOC_017496 NA coding downstream 375815 35857399 ~ 35980452 (+)
XLOC_017497 opn5 coding downstream 516489 35998073 ~ 36036696 (+)
XLOC_017498 cnih3 coding downstream 752289 36233873 ~ 36298140 (+)
XLOC_017484 NA non-coding upstream 458786 35012634 ~ 35014502 (+)
XLOC_017483 BX470246.1 non-coding upstream 487506 34985123 ~ 34985782 (+)
XLOC_017482 NA non-coding upstream 507295 34962154 ~ 34965993 (+)
XLOC_017499 BX000468.1 non-coding downstream 798464 36280048 ~ 36280164 (+)
XLOC_017500 NA non-coding downstream 821213 36302797 ~ 36304106 (+)
XLOC_017504 NA non-coding downstream 1233319 36714903 ~ 36715819 (+)

Expression


Co-expression Network