XLOC_017482


Basic Information

Item Value
gene id XLOC_017482
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34962154 ~ 34965993 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036621
taaaaaaaatgttgatacaGATTATTGATTGTCATATTTCGGAATTCTTGCCTAAAAAGTCCCTATAGTCTCGACTACAACATCAAAAATTAATGCTTTCCGTGTCCTTCTCCCCACTGCCCTCAGCGCTCATTCTGTCTCTCAGCTGTTTGTGTCCCACTGAACCAACATGTTCCCTTCTTGTCACATTAAGTCGACACGTCACGCCTTTGCTGTGTCTTTGAGTGAGTCTGACTGAAGTTCACATCCTCATCTTCTTCTCAGTCACCCTCCCCATCTCACTTTCTCCAGCACCTCCCTCCTTGCCCGTGGCGGTAACCGATGCTGCATCATGCGGTGGTGCGCTTCCCCCCGCCCTGTGTCCTGCGACCACAGAACAAGCCCACTATTAAGTAGTCAGCAGAGTTCAAATCATACGGCAGATCTTGCACTTGCGCCCGGCGCTCTCAGCAACACATTAGCGCGGCTTCACCGGATCTGTCCATATCTTTGACACGTTCCCGTGGCGAGCCGAAAGCAATCACACACTGTCCAAACCCTCCagatcacgcacacacacacttacaccgACCGGTTGAAGCGCTCCACCGGACTACAGACTACAGAGAGGGAGGATGAGATGAAGGGAGATGTTTGGGTAAAATGAGGCTCGAGAAGGGAGGGTGACTTACATAAGGCTTTTGCGGTAGAGGCACACGGTGgaaagccgttttaacatttaaagtcgaaatgaaatcaaaatgtaatcttatttttaatatattgctTGTTATAAAAGATGTGTAAAAATTTCCAGTGAATTGTggctaatatttttattatttgatactAGCAATTATTGGACACTTATAGCTTAAATAGTAATTACATAAGAACTCATAATATAGTTTGATTTATACTCTACTCTTATTGATTAGTTACAAATTCTTATTCAAATAGACAGTGTGTTTATTAAATAGTAGGCTAGTACttcttttaaaaagttacttgtaagattttttattttagtattgttttaCTGACTGGTTCTTCTGAGTTCTGACACAACACGTTACACAAGGACCATTAAGAAtgtaataaataagaactagtaacTAGTTGAAAACACTAGTTTGAGTAATAAAAGCAGAATAAATATGCTTGAATACCTAATAAAAAAGTAGTGGTCTCTATCTGTTAAGCCAGTAGTAGCctataggcaaggcaaggtaaACTTTATTTAAAGAGCACAGTTTTACACAAccatagttgatcaaaagtgctttacaataaaataaaaaatacataaactaaaATACAGATGTGAaataacatgcatgcatgcatcatTTAAAGGCAAGGAAAtaaaattaagtctttaaattaattttaaaagcatCTAATGATGGAGAAATCCTAATTTTCAGAAGGAGACTGTTTCAAAGCCTTGGGGCTGCCGCACAGAAAGCTTGctcaccttttgatttgcagccTAGATTATATGTTAAATTGGCTTGCCATAGATGTTCTAAAACATGGCATGAGAAACGACTAGTTCCTCTGGAGGACTGGAAAGAGGGAGGGAGAAGAATACGGAGTACAGAAGACTGATGAGGGTTTATGTACAATGTGCACAGTCGGTCGGCGAGAAAGGCCTCAGGACTGGATTGTAGGCTTGGTGGAAAGCAAGGAAAGCAGGAATGGGAATggcttttgaaaattaaaaatgtggCAAAGAGCAAAAGAGAGTGGGAGAAATGTGGATGAGGATGCGACGGGAAAATGGGAATATCAAAATACAGCAAAGATAATGTGAATCAAATAAAGACAGGAGTTTCCGATGAACAAGCATCAATGGGATCATCATTTTGAAAGTTTCAAGCAACAAAGTGTTTTCTTGGTAGTTTATTTGGTGAACGATGTATACATTTCATCCTGTGTCATGTCATGTCCTCAAAAGGCTATTCATTCAGTCCCCATGTGCACCTGTAGTGTAATTAAAGGATTTATTTCCCCAAACCATTCACCATTAAATGAATGGTGACTTTTTTTTAAGACTCTAAAATCTCCTTCATTTCATGTAAAGGTTAGACAGAAATCTCTTCCATTTCATGTTAAATTTCTCAGTGATCCCTAAAACTTTTCCTAAAATTTCTTGTAGGGTTTTGAATGGCAGAAGTGTAACTAAATAAtgacagactttttattttgggCTGAACTAACCAATTAAAAACCATAATGTCACAATCACCAGAGATCCAGgcttgcagatcgctggtaagtgatgttttgtaaacaaatttcgggaggagcatgcgcagaagtttcagtatcgaatacgtcattgacaattatcccatcatcaaatcagctCTTGAgcaacccctatatataccaaagctgtcttacctgcagcatctcacgactttagcatccctcccccaccccgtcacctcacctcttgcattacattcccggggggagcgttctggggccggactagatacttcgctcgactcccaactcctctttgtttcctgataaggggaataacttgagttggggtgtctcctcgagctcagagccatCCCCccagacagcatgccaaatatgctttatacttaaacgaatgcaagtgtgaactcgtgaaaaaTGCGCCACCACACCTTATGAACTAAAAATCccgtcatgcacctcacacacacctgtattCGGAACTCcgatgattacacacacacacagctggtagCTGATCTAAAACTTATTACTGATATTTATatactgattacatggactatttattcagctcacattcacacacactttgaTGAGTCTGGTTGTTTGATCACTGTTAGCATTACGAAATGGTTTCCTTGTCTTACCATGTTTTTgacctttgttttattttattgtttatgctggtatgaggcttcatgaaacactgaaacagtcaaagCTTCTCTACAGTGGCACTTTTTGGTCATTGTTTATGTATTGCTCtagaacagcttcagcaaagaaacagtagGTAGAATTTaggtttcaagtgatttagtgaagcggTGAGAGTTCCAGACTAACATGCTGAGATAATTGGTTCgaatccagggtgatgcagctatagatgttaGCTTTAAATGCACTGTTCTTGTAACCTGTTTCGTTTTAACATTGATCTCACATCAAAATGATCACTTTGTGAAAaaatttgtcttgttttggtcataaaatgtAACAGTTACTCTGAGCACATGCACGATCCATTATTTAcgaccctgtcagtcaaatgcaGGGTTGCCTGGTCTGGAAACATTTCTGAAATGACCGATGCATTGAATTGCTTTGGTCACACAACCTAGTGTTTCACGCAACTGTGTGTTtcaaatcaccttagtcacgtgaATGTGTTTCGAATCACCTCACGTGACCTGGGTGATTCGTATCATGCTTCGATGCAGTTTTTCGTAACACTTGCGCTTCgagatctcgacactgtgttgaAATGTCAGTTTCACATCAGCCATCCCTACTGTTATGCCGTCTGTCATAAGCATTCGCCTGTTATTTTGACCAGGCTCTTAGGATTGCCCTCATGCTTCAGTTTGTACCTGCTTGaacattgcctgcctgactaatcTTGTATATTAAACTGCACATGGATCATCTCTGTGGATCCTCATCTAACACATAAAGATAAAACTGTATTCTCAGATATTCATGGAATAAATTTCATTTTAAGTATTCTTTAATAACATACactttttaataaagttaaaCTTGTTAAACGCAcacttttaatttacttttaaagcaTCAATGTCAAATGAATGgtctaaacattttaaataaaatctgtaCATT

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036621 True 3840 lncRNA 0.39 1 34962154 34965993

Neighbor

gene id symbol gene type direction distance location
XLOC_017481 snap25a coding upstream 5924 34913069 ~ 34956230 (+)
XLOC_017480 ankef1a coding upstream 59949 34868933 ~ 34902205 (+)
XLOC_017479 emilin1a coding upstream 97123 34845672 ~ 34865031 (+)
XLOC_017478 il17a/f3 coding upstream 167689 34792166 ~ 34794465 (+)
XLOC_017477 mcm3 coding upstream 178411 34770197 ~ 34783743 (+)
XLOC_017483 BX470246.1 coding downstream 19130 34985123 ~ 34985782 (+)
XLOC_017484 NA coding downstream 46641 35012634 ~ 35014502 (+)
XLOC_017485 hnrnpub coding downstream 92641 35058634 ~ 35070476 (+)
XLOC_017486 cdc42bpab coding downstream 119231 35085224 ~ 35206280 (+)
XLOC_017487 fbxo16 coding downstream 242027 35208020 ~ 35254641 (+)
XLOC_017475 NA non-coding upstream 195711 34761743 ~ 34766443 (+)
XLOC_017476 NA non-coding upstream 196337 34764450 ~ 34765817 (+)
XLOC_017472 BX279523.3 non-coding upstream 297392 34663322 ~ 34664762 (+)
XLOC_017471 BX279523.2 non-coding upstream 298956 34661555 ~ 34663198 (+)
XLOC_017455 BX296562.2 non-coding upstream 986862 33959570 ~ 33975292 (+)
XLOC_017489 BX511024.1 non-coding downstream 416445 35382438 ~ 35429737 (+)
XLOC_017490 BX510920.1 non-coding downstream 456705 35422698 ~ 35422827 (+)
XLOC_017495 NA non-coding downstream 746609 35712602 ~ 35827205 (+)

Expression


Co-expression Network