XLOC_017481 (snap25a)


Basic Information

Item Value
gene id XLOC_017481
gene name snap25a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34913069 ~ 34956230 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034737
CACACGCGCATCGCCGTTGCAGCAGCTCAGTCCCTACAGAAAGGGGTTGATGGTGGTTCGTTGTTGAAATCCGCAGACAGACACTGCATTACTGACGCTCCTCCAGCGACTACGGGATCAGCTTCCCCCAGACTTCCAGTAAGAGCCCGTTGGAGAGCAGCTCCACCAAGCACAACCAGCAGTCATGGCAGAGGATTCGGATATGCGCAATGAGCTCGCTGACATGCAGCAACGTGCAGACCAGCTGGCCGATGAGTCACTGGAGAGCACCCGTCGTATGCTGCAGCTTGTGGAAGAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGCTGGATGAGCAGGGAGAGCAACTGGAACGCATCGAGGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAAAATTCTGTGGTCTTTGTTCCTGTCCATGTAACAAAATGAAGAGTGGCGCCAGCAAGGCTTGGGGAAACAACCAGGATGGAGTGGTTGCCAGCCAGCCTGCCCGCGTTGTGGATGAGCGTGAACAGATGGCCATCAGCGGAGGCTTCATCCGCAGGGTAACAGACGACGCCAGGGAAAATGAGATGGATGAGAACTTAGAGCAGGTGGGAGGCATCATTGGTAACTTGCGCCACATGGCCCTTGATATGGGCAACGAGATCGATACCCAGAACCGCCAGATCGACAGGATCATGGAGAAGGCTGATTCCAACAAGACCAGGATTGATGAAGCCAACCAGAGGGCCACAAAGATGCTGGGCAGTGGCTAAACCTCTGCTCTGCCTGCTTTTACCAACTGTGCAGTTTGTCAAAAGGCAATGCGCTTATCATGGTATTTACCTTCTAGGTTTGCACACATGCACATATCACCCGGCCCCCATTGTAAATGTCGTTCTATGTGTCGTCTGTCAGCTTTTTCAATGATTGTCCTCGTAAAATGATTTCTTATACTCTGTATCATTCTTTCCAAAGGTTGTATATAGTGCTGACTCGATGGCTCTTGCTCACTTGTGAAGTTTTTATTCTCTTTATTGCctgtatacatatatgtatgtatgtatacatatatccGCTTGTATGTGTATACATCTAGcctatgtgtatatacatatatataaatatatatctcacATTTTTGCTGGAGGAACTATATAGGAATGCTATACAAGCTGTCTTTCCTTTTCAGTATATCTCAGTATCGTCTTGGTAAAACTGTGTCACTCCACTCGGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACTATGAAGAATGGGAAAAAAGATTTTGCAACCGATACTAATACGACGAGCACTTACAATCAATGTCTTTGGTTCATATCCCTCATCACGACCATAATCAGTTACTGTTTAGACAATGTGCAACTAGATTCTGTAGCTGTAGTAGTAAAAACATTGCATTCCAAGTGATGTGAATTGTGCGTTATGCATGACAAATGGTAGATCTTAGCGTCTTATAaataaaaacttgttttaaaaaaagatgaccaaaaaaaacaacaaagaaacacACAATAAATCATGGCAGTAGCAAAATTGACAAAAGCATGCTCAGTATTAGGACACAGTGGAACGTTCCATATTACTGCAAGTTTGCAATAGTGCCACCATTTCAGTcgatatatatatttacagactgtgacttttgttgtaaaataatgcaaagtGACTTAAAGAAGCCGTGCGAAGGGATGGAAACAAAGCTGGAGTGGTGGTCCTGCAAAAACGACTTGTTTTCTAAAAATGAATATGCAGTTTGGTGTAGAAAATGGTGTTCTGAAAGGTGGGGACTGGTTGTTTACTGTATCATAGGTTTTGgatgctctgaaaaaaaaaagaaataaatcattTGCAATGTAAAGCAAAGACGCATATTTCTGAGAGACCTTACTTTTATAAGAAGACTGTATCCTGTTAGTTTACTTTCCCCGTGTGGTTTGTTATtggtaaaaaatgataataatccataacaaaaaaaaagtttttttttttttttgttgcttctgTACTTAGAGCTATGCACACCAAATCACTAAGATGTTGAATAGTTATTATAAGAAGTCAAATAAATACCTTACCTGAATGACACATAGGTTAAACTGTGAGATTGATGTCCTCAACGCATGTAATATTAAAACTCCCTCTGTATCCTGTCAGTCTGTGAAGTGGTTGACATTTTGTAGCTAGCTGAATTGATTAAAAGTAATAAACCCCTAATCGCCGTGGGTTTTCATTATTGTCTCAAGCTAACTTCATTGTCGCTTGATAGAGCTGATTTCTGGGAATTGAGTTAGCTattgtttcactttttttttctgatcacATCAACTCAAAATATCTTGCTGTTTCTTGTAAGCATGTATTGCAGTTTTGTAAACTGGACCATTAAATGTTCAAGCTCTTT
>TCONS_00034738
CGGCGGTTTGAGAGACAGGTTGGCACGCTTCTGTTGTTGAATCTGATGGTTTAATGCGGCTTATTATGGCTTGACTGCAGAGCGCAGGGCGGCAGGGATGTTCCCGAATAAGTGGTGACTCACGCGATACCAGACCGCGATTCATCTTGATTTACGATGCCCATTCCTGCTTAAAATATAGCTTCCCCCAGACTTCCAGTAAGAGCCCGTTGGAGAGCAGCTCCACCAAGCACAACCAGCAGTCATGGCAGAGGATTCGGATATGCGCAATGAGCTCGCTGACATGCAGCAACGTGCAGACCAGCTGGCCGATGAGTCACTGGAGAGCACCCGTCGTATGCTGCAGCTTGTGGAAGAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGCTGGATGAGCAGGGAGAGCAACTGGAACGCATCGAGGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAAAATTCTGTGGTCTTTGTTCCTGTCCATGTAACAAAATGAAGAGTGGCGCCAGCAAGGCTTGGGGAAACAACCAGGATGGAGTGGTTGCCAGCCAGCCTGCCCGCGTTGTGGATGAGCGTGAACAGATGGCCATCAGCGGAGGCTTCATCCGCAGGTGAGACGCACAGG
>TCONS_00034739
CTTCCCCCAGACTTCCAGTAAGAGCCCGTTGGAGAGCAGCTCCACCAAGCACAACCAGCAGTCATGGCAGAGGATTCGGATATGCGCAATGAGCTCGCTGACATGCAGCAACGTGCAGACCAGCTGGCCGATGAGTCACTGGAGAGCACCCGTCGTATGCTGCAGCTTGTGGAAGAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGCTGGATGAGCAGGGAGAACAACTCGATCGTGTTGAAGATGGCATGAACCATATCAACCAAGACATGAAGGAGGCCGAGAAAAATTTAAAAGATTTAGGGAAATGCTGTGGCCTTTTCATATGTCCATGTAACAAAATGAAGAGTGGCGCCAGCAAGGCTTGGGGAAACAACCAGGATGGAGTGGTTGCCAGCCAGCCTGCCCGCGTTGTGGATGAGCGTGAACAGATGGCCATCAGCGGAGGCTTCATCCGCAGGGTAACAGACGACGCCAGGGAAAATGAGATGGATGAGAACTTAGAGCAGGTGGGAGGCATCATTGGTAACTTGCGCCACATGGCCCTTGATATGGGCAACGAGATCGATACCCAGAACCGCCAGATCGACAGGATCATGGAGAAGGCTGATTCCAACAAGACCAGGATTGATGAAGCCAACCAGAGGGCCACAAAGATGCTGGGCAGTGGCTAAACCTCTGCTCTGCCTGCTTTTACCAACTGTGCAGTTTGTCAAAAGGCAATGCGCTTATCATGGTATTTACCTTCTAGGTTTGCACACATGCACATATCACCCGGCCCCCATTGTAAATGTCGTTCTATGTGTCGTCTGTCAGCTTTTTCAATGATTGTCCTCGTAAAATGATTTCTTATACTCTGTATCATTCTTTCCAAAGGTTGTATATAGTGCTGACTCGATGGCTCTTGCTCACTTGTGAAGTTTTTATTCTCTTTATTGCctgtatacatatatgtatgtatgtatacatatatccGCTTGTATGTGTATACATCTAGcctatgtgtatatacatatatataaatatatatctcacATTTTTGCTGGAGGAACTATATAGGAATGCTATACAAGCTGTCTTTCCTTTTCAGTATATCTCAGTATCGTCTTGGTAAAACTGTGTCACTCCACTCGGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACTATGAAGAATGGGAAAAAAGATTTTGCAACCGATACTAATACGACGAGCACTTACAATCAATGTCTTTGGTTCATATCCCTCATCACGACCATAATCAGTTACTGTTTAGACAATGTGCAACTAGATTCTGTAGCTGTAGTAGTAAAAACATTGCATTCCAAGTGATGTGAATTGTGCGTTATGCATGACAAATGGTAGATCTTAGCGTCTTATAaataaaaacttgttttaaaaaaagatgaccaaaaaaaacaacaaagaaacacACAATAAATCATGGCAGTAGCAAAATTGACAAAAGCATGCTCAGTATTAGGACACAGTGGAACGTTCCATATTACTGCAAGTTTGCAATAGTGCCACCATTTCAGTcgatatatatatttacagactgtgacttttgttgtaaaataatgcaaagtGACTTAAAGAAGCCGTGCGAAGGGATGGAAACAAAGCTGGAGTGGTGGTCCTGCAAAAACGACTTGTTTTCTAAAAATGAATATGCAGTTTGGTGTAGAAAATGGTGTTCTGAAAGGTGGGGACTGGTTGTTTACTGTATCATAGGTTTTGgatgctctgaaaaaaaaaagaaataaatcattTGCAATGTAAAGCAAAGACGCATATTTCTGAGAGACCTTACTTTTATAAGAAGACTGTATCCTGTTAGTTTACTTTCCCCGTGTGGTTTGTTATtggtaaaaaatgataataatccataacaaaaaaaaagtttttttttttttttgttgcttctgTACTTAGAGCTATGCACACCAAATCACTAAGATGTTGAATAGTTATTATAAGAAGTCAAATAAATACCTTACCTGAATGACACATAGGTTAAACTGTGAGATTGATGTCCTCAACGCATGTAATATTAAAACTCCCTCTGTATCCTGTCAGTCTGTGAAGTGGTTGACATTTTGTAGCTAGCTGAATTGATTAAAAGTAATAAACCCCTAA
>TCONS_00036620
CCACCAAGCACAACCAGCAGTCATGGCAGAGGATTCGGATATGCGCAATGAGCTCGCTGACATGCAGCAACGTGCAGACCAGCTGGCCGATGAGTCACTGGAGAGCACCCGTCGTATGCTGCAGCTTGTGGAAGAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGCTGGATGAGCAGGGAGAACAACTCGATCGTGTTGAAGATGGCATGAACCATATCAACCAAGACATGAAGGAGGCCGAGAAAAATTTAAAAGATTTAGGGAAATGCTGTGGCCTTTTCATATGTCCATGTAACAAAGCAACTGGAACGCATCGAGGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAAAATTCTGTGGTCTTTGTTCCTGTCCATGTAACAAAATGAAGAGTGGCGCCAGCAAGGCTTGGGGAAACAACCAGGATGGAGTGGTTGCCAGCCAGCCTGCCCGCGTTGTGGATGAGCGTGAACAGATGGCCATCAGCGGAGGCTTCATCCGCAGGGTAACAGACGACGCCAGGGAAAATGAGATGGATGAGAACTTAGAGCAGGTGGGAGGCATCATTGGTAACTTGCGCCACATGGCCCTTGATATGGGCAACGAGATCGATACCCAGAACCGCCAGATCGACAGGATCATGGAGAAGGCTGATTCCAACAAGACCAGGATTGATGAAGCCAACCAGAGGGCCACAAAGATGCTGGGCAGTGGCTAAACCTCTGCTCTGCCTGCTTTTACCAACTGTGCAGTTTGTCAAAAGGCAATGCGCTTATCATGGTATTTACCTTCTAGGTTTGCACACATGCACATATCACCCGGCCCCCATTGTAAATGTCGTTCTATGTGTCGTCTGTCAGCTTTTTCAATGATTGTCCTCGTAAAATGATTTCTTATACTCTGTATCATTCTTTCCAAAGGTTGTATATAGTGCTGACTCGATGGCTCTTGCTCACTTGTGAAGTTTTTATTCTCTTTATTGCctgtatacatatatgtatgtatgtatacatatatccGCTTGTATGTGTATACATCTAGcctatgtgtatatacatatatataaatatatatctcacATTTTTGCTGGAGGAACTATATAGGAATGCTATACAAGCTGTCTTTCCTTTTCAGTATATCTCAGTATCGTCTTGGTAAAACTGTGTCACTCCACTCGGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACTATGAAGAATGGGAAAAAAGATTTTGCAACCGATACTAATACGACGAGCACTTACAATCAATGTCTTTGGTTCATATCCCTCATCACGACCATAATCAGTTACTGTTTAGACAATGTGCAACTAGATTCTGTAGCTGTAGTAGTAAAAACATTGCATTCCAAGTGATGTGAATTGTGCGTTATGCATGACAAATGGTAGATCTTAGCGTCTTATAaataaaaacttgttttaaaaaaagatgaccaaaaaaaacaacaaagaaacacACAATAAATCATGGCAGTAGCAAAATTGACAAAAGCATGCTCAGTATTAGGACACAGTGGAACGTTCCATATTACTGCAAGTTTGCAATAGTGCCACCATTTCAGTcgatatatatatttacagactgtgacttttgttgtaaaataatgcaaagtGACTTAAAGAAGCCGTGCGAAGGGATGGAAACAAAGCTGGAGTGGTGGTCCTGCAAAAACGACTTGTTTTCTAAAAATGAATATGCAGTTTGGTGTAGAAAATGGTGTTCTGAAAGGTGGGGACTGGTTGTTTACTGTATCATAGGTTTTGgatgctctgaaaaaaaaaagaaataaatcattTGCAATGTAAAGCAAAGACGCATATTTCTGAGAGACCTTACTTTTATAAGAAGACTGTATCCTGTTAGTTTACTTTCCCCGTGTGGTTTGTTATtggtaaaaaatgataataatccataacaaaaaaaaagtttttttttttttttgttgcttctgTACTTAGAGCTATGCACACCAAATCACTAAGATGTTGAATAGTTATTATAAGAAGTCAAATAAATACCTTACCTGAATGACACATAGGTTAAACTGTGAGATTGATGTCCTCAACGCATGTAATATTAAAACTCCCTCTGTATCCTGTCAGTCTGTGAAGTGGTTGACATTTTGTAGCTAGCTGAATTGATTAAAAGTAATAAACCCC
>TCONS_00034740
CTTGATCGATAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGCTGGATGAGCAGGGAGAGCAACTGGAACGCATCGAGGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAAAATTCTGTGCTGTCTTTCCTTTTCAGTATATCTCAGTATCGTCTTGGTAAAACTGTGTCACTCCACTCGGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACTATGAAGAATGGGAAAAAAGATTTTGCAACCGATACTAATACGACGAGCACTTACAATCAATGTCTTTGGTTCATATCCCTCATCACGACCATAATCAGTTACTGTTTAGACAATGTGCAACTAGATTCTGTAGCTGTAGTAGTAAAAACATTGCATTCCAAGTGATGTGAATTGTGCGTTATGCATGAC

Function

symbol description
snap25a Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Acts upstream of or within locomotory behavior and mitotic cytokinesis. Located in plasma membrane. Is expressed in head; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in Down syndrome and congenital myasthenic syndrome 18. Orthologous to human SNAP25 (synaptosome associated protein 25).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0007626 locomotory behavior biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0043005 neuron projection cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-468 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Acts upstream of or within locomotory behavior and mitotic cytokinesis. Located in plasma membrane. Is expressed in head; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in Down syndrome and congenital myasthenic syndrome 18. Orthologous to human SNAP25 (synaptosome associated protein 25).

Ensembl:

ensembl_id ENSDARG00000020609

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034737 False 2455 mRNA 0.41 8 34913069 34956230
TCONS_00034738 False 659 mRNA 0.52 6 34915945 34951328
TCONS_00034739 False 2147 mRNA 0.41 7 34933183 34956043
TCONS_00036620 False 2221 lncRNA 0.40 8 34933224 34956040
TCONS_00034740 True 441 processed_transcript 0.40 3 34943371 34955260

Neighbor

gene id symbol gene type direction distance location
XLOC_017480 ankef1a coding upstream 10864 34868933 ~ 34902205 (+)
XLOC_017479 emilin1a coding upstream 48038 34845672 ~ 34865031 (+)
XLOC_017478 il17a/f3 coding upstream 118604 34792166 ~ 34794465 (+)
XLOC_017477 mcm3 coding upstream 129326 34770197 ~ 34783743 (+)
XLOC_017475 NA coding upstream 146626 34761743 ~ 34766443 (+)
XLOC_017482 NA coding downstream 5924 34962154 ~ 34965993 (+)
XLOC_017483 BX470246.1 coding downstream 28893 34985123 ~ 34985782 (+)
XLOC_017484 NA coding downstream 56404 35012634 ~ 35014502 (+)
XLOC_017485 hnrnpub coding downstream 102404 35058634 ~ 35070476 (+)
XLOC_017486 cdc42bpab coding downstream 128994 35085224 ~ 35206280 (+)
XLOC_017476 NA non-coding upstream 147252 34764450 ~ 34765817 (+)
XLOC_017472 BX279523.3 non-coding upstream 248307 34663322 ~ 34664762 (+)
XLOC_017471 BX279523.2 non-coding upstream 249871 34661555 ~ 34663198 (+)
XLOC_017455 BX296562.2 non-coding upstream 937777 33959570 ~ 33975292 (+)
XLOC_017489 BX511024.1 non-coding downstream 426208 35382438 ~ 35429737 (+)
XLOC_017490 BX510920.1 non-coding downstream 466468 35422698 ~ 35422827 (+)

Expression


Co-expression Network