RNA id: TCONS_00034746


Basic Information

Item Value
RNA id TCONS_00034746
length 540
lncRNA type retained_intron
GC content 0.36
exon number 2
gene id XLOC_017486
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35085224 ~ 35206280 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACATGCCGTGGAAGATGAGGCGTTTCGCCAAGCTGGACATGTCTGCGCGTCTGGAGCTGCAGTCGGCGCTGGATACTGAGATCAGAGCCAAACAGTCCATCCAAGACGAGCTTAACAAAGTCAAAGCAACCAACATTGCCACAGAATGCAAATTGCAAGAATCCGAAAGTAGAAACCAGGAGCTGCTGGGAGAAATTGAGAGACTGAGGAAGGAGACAGAGGAGCTAAGGCTGAGGAGAGGTGAAAAGCTCtcataattatttatgtatatgcTTTTAAAGGCtttgttaatattttgaattagttTCTTTTCTTGTAGTTTTCATTTGATTTTGAAAGTAATTgttataatactttttttccatttgtagctttaatgtttttattgactGAGTTTTTGCAAATCTTATCTAACAATTTCAGGcatcatgttttatatatatatatactgtatatacacacacacaacttaatttgcaaaaacagatccagcattttttgtaatattcagttatcatttttttatgttttaacagcA

Function

GO:

id name namespace
GO:0018107 peptidyl-threonine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0016310 phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0042641 actomyosin cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-17 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actomyosin structure organization and peptidyl-threonine phosphorylation. Predicted to act upstream of or within actin cytoskeleton organization; intracellular signal transduction; and protein phosphorylation. Predicted to be located in lamellipodium. Predicted to be active in actomyosin and cytoplasm. Orthologous to human CDC42BPA (CDC42 binding protein kinase alpha).

Ensembl:

ensembl_id ENSDART00000153313

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036622 lncRNA upstream 161325 35012634 ~ 35014502 (+) True XLOC_017484
TCONS_00034741 lncRNA upstream 190045 34985123 ~ 34985782 (+) True XLOC_017483
TCONS_00036621 lncRNA upstream 209834 34962154 ~ 34965993 (+) True XLOC_017482
TCONS_00036620 lncRNA upstream 219787 34933224 ~ 34956040 (+) False XLOC_017481
TCONS_00036618 lncRNA upstream 409384 34761743 ~ 34766443 (+) True XLOC_017475
TCONS_00034755 lncRNA downstream 102154 35279996 ~ 35283418 (+) False XLOC_017488
TCONS_00034758 lncRNA downstream 112992 35290834 ~ 35296967 (+) False XLOC_017488
TCONS_00034759 lncRNA downstream 115363 35293205 ~ 35297542 (+) True XLOC_017488
TCONS_00034764 lncRNA downstream 255352 35433194 ~ 35434917 (+) True XLOC_017491
TCONS_00036623 lncRNA downstream 272434 35450276 ~ 35459449 (+) True XLOC_017492
TCONS_00034745 mRNA upstream 50813 35086242 ~ 35125014 (+) False XLOC_017486
TCONS_00034742 mRNA upstream 105351 35058634 ~ 35070476 (+) False XLOC_017485
TCONS_00034737 mRNA upstream 219597 34913069 ~ 34956230 (+) False XLOC_017481
TCONS_00034739 mRNA upstream 219784 34933183 ~ 34956043 (+) False XLOC_017481
TCONS_00034738 mRNA upstream 224499 34915945 ~ 34951328 (+) False XLOC_017481
TCONS_00034747 mRNA downstream 30178 35208020 ~ 35252136 (+) False XLOC_017487
TCONS_00034748 mRNA downstream 30226 35208068 ~ 35254641 (+) False XLOC_017487
TCONS_00034749 mRNA downstream 69568 35247410 ~ 35254630 (+) False XLOC_017487
TCONS_00034750 mRNA downstream 70012 35247854 ~ 35254191 (+) True XLOC_017487
TCONS_00034752 mRNA downstream 77561 35255403 ~ 35298023 (+) False XLOC_017488
TCONS_00034743 other upstream 111846 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034740 other upstream 220567 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034653 other upstream 2705373 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2743360 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 3452330 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034756 other downstream 102154 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 204596 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 244856 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034779 other downstream 1102206 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034815 other downstream 2643148 37820990 ~ 37826136 (+) False XLOC_017519

Expression Profile

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