RNA id: TCONS_00036622


Basic Information

Item Value
RNA id TCONS_00036622
length 1869
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id XLOC_017484
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35012634 ~ 35014502 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttctcccacaagtccaaagacctgATACAAGTgaattggtaagctaaattgtccgtagtgtatgtttgtgtatgggTTCCCAGTAAATGATGGGTTGGGTTGTAgctggcatctgctgcgtaaaacatgtgctggataagttggcggttcattccgctgtggtgaccccagattaataaagagactaagccgaaatgaaaatgaatgaatgattctgaaTAATATGATGTTAAAACAAAGAAGCATACACTCCTCAGACTGTTTAAATTAATAATGGAATCAAATGGACTGCCTGTATATACAGTTTTACCAATCCCTCagcattacattaaaatatttaatatcttAAAGAATCTTTTTTATTCCctcccaaaaataaataaactgttatgGGCTGAAATTACAGATTGCGGGCAAACATAAATGAACAGAATATGCAGGAATTGGAGCAGAAAGTAAACGCAACCCTTTGCAAAATGGAGTCATTATGGTGGCTTGCTGCAATATGTCCCTGACTTAATAATAGGGCAGTTTCTGTGCTATCGTAACATCTTAGTGAACTCTTATAAGGGCTGCACTTCATCATAGCTGGGAAAGATGTGTTGTGACAGGTCTATAAGCTGATCTGTTGACTTATTTCTAGGTCTGAATGTTTTAgtatgtgaaaaaataaataattttaaaaagaaaatcatgcTTTTAATTAAATCTAATGATCACAGTGAGTATTTAACATGTCAATAAATTGCTATAATTTGAATTAAATCATTTATAACTTAAAGACAATGCATACAAAAGTGCATAAcaactttttattttagcatacacaagaaataaataacttttacatTAGGACTTCCAAATTATTTGCTGTTAGAGCATCAGCAAGGGCAACAAAATACACACTGGGTATTAAAATTACCTTGAAAGGGATTATTTTAACTCTCAGTTAAAGTTGCTTTTGCAGAGGTCTTTTTCTAACCcattattttaccccttttaaaaAGGGTGTAAATAGGTTAGTTTTATTTCACaccctttcattttattttgtacttatttattttattttcaaagaaaGTGGGTTACCACAACTTTTAAGTTTAGGCCAAAATATATGCATTTCTGTGAAACAATAAGgtgctacagtttttttttcttatgcagATAATCATAAAGTTATGCTTCAGAGAGAAACGGATTAAATACCTATACAAGCAGTTATATTACAGACAAAAAAAGGttatacaaatgcaaaaaaacaaaacacgatTGTCCAAAAACACCACCCTATAGCTTAACAGTTTCAGGCGTGGAAAGCCTATCAGCCAATTTAAGTTCAGACAGTATCTGCAACCTATTGTTGTTAGCTTTAAGGCTAATGCTAACAGCACAAACCATTTACAGCAAATTAAATTTCAAGTAAATGCCAATGGAAGCTTTTGAGATCATTTAAAGGCATTGATTTGCATACAATTTCAAACAATGCataacatgtaaacactgcatgCTAAATTCCTACAAATGTAGTATGATCTATGGTGGGCCGATGCCTCCACTTTAGTCTGCACTTGGGTGTAACATCGAAGCTGGTGACCATCAACACATGTGCTTTACAGAGGTTAACATGACGCTCTAGTCGCTCCGTGACCACCTCCAAGGCCTCCAAATGCTCCAGGGAGTCTACCTCAAAGGTTTGCCATAAGTCAACTGCAAAATACATGAAACAAACAGCATCATAATTAATGAATAATCACAATCTGGAGTTTGTGATTCCCTACAGTgttcttaacatttattattatgcatGAGCAATATTTTAACCCTTACATTCACGGGTCCATTTTGCAGGGTCCAACATCAGATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034741 lncRNA upstream 26852 34985123 ~ 34985782 (+) True XLOC_017483
TCONS_00036621 lncRNA upstream 46641 34962154 ~ 34965993 (+) True XLOC_017482
TCONS_00036620 lncRNA upstream 56594 34933224 ~ 34956040 (+) False XLOC_017481
TCONS_00036618 lncRNA upstream 246191 34761743 ~ 34766443 (+) True XLOC_017475
TCONS_00036619 lncRNA upstream 246817 34764450 ~ 34765817 (+) True XLOC_017476
TCONS_00034746 lncRNA downstream 161325 35175827 ~ 35177842 (+) True XLOC_017486
TCONS_00034755 lncRNA downstream 265494 35279996 ~ 35283418 (+) False XLOC_017488
TCONS_00034758 lncRNA downstream 276332 35290834 ~ 35296967 (+) False XLOC_017488
TCONS_00034759 lncRNA downstream 278703 35293205 ~ 35297542 (+) True XLOC_017488
TCONS_00034764 lncRNA downstream 418692 35433194 ~ 35434917 (+) True XLOC_017491
TCONS_00034737 mRNA upstream 56404 34913069 ~ 34956230 (+) False XLOC_017481
TCONS_00034739 mRNA upstream 56591 34933183 ~ 34956043 (+) False XLOC_017481
TCONS_00034738 mRNA upstream 61306 34915945 ~ 34951328 (+) False XLOC_017481
TCONS_00034735 mRNA upstream 110429 34868933 ~ 34902205 (+) False XLOC_017480
TCONS_00034736 mRNA upstream 126532 34870517 ~ 34886102 (+) True XLOC_017480
TCONS_00034742 mRNA downstream 44132 35058634 ~ 35070476 (+) False XLOC_017485
TCONS_00034744 mRNA downstream 70722 35085224 ~ 35206280 (+) False XLOC_017486
TCONS_00034745 mRNA downstream 71740 35086242 ~ 35125014 (+) False XLOC_017486
TCONS_00034747 mRNA downstream 193518 35208020 ~ 35252136 (+) False XLOC_017487
TCONS_00034748 mRNA downstream 193566 35208068 ~ 35254641 (+) False XLOC_017487
TCONS_00034740 other upstream 57374 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034653 other upstream 2542180 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2580167 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 3289137 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 3625463 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034743 other downstream 48304 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 265494 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 367936 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 408196 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034779 other downstream 1265546 36280048 ~ 36280164 (+) True XLOC_017499

Expression Profile

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