RNA id: TCONS_00034727



Basic Information


Item Value
RNA id TCONS_00034727
length 608
lncRNA type antisense
GC content 0.38
exon number 2
gene id XLOC_017472
representative True

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34663322 ~ 34664762 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CCTGACAGCTCAAAAATCACAAAATCGTAGCGTATGATCTGCTGAAGATCTTCTGCAGGGTTAAAGAGGAAATGCTCCCTCCATTCATTCCAGTCCAGAGTCATGGTTCCATCCACATCAATGCTGGAGGATAAAGGGTCAAAGGTCAAATCAGAACAATTTCCTGTGTGATCAATCTATACTTGAGTTTAATCTGTGAATCTGCAGAAAAGGTTAATGATATTTCTTCCTTGACCTCATATACAGTACACCGTTAAAGACATAAATATTAGCCCTTCTCTAAAACTTTAAAGTCCATGTCAAATCTAAATCTTGaatttgctagctcacattgttatttgTAAAGTTCATAATTAATCTGTGCCAGTTAATCCTCAGGGAAAAATAAGTTTGTTCTGGTTATTTTTAATCGAAGTTTCTTTGGAGCAGGGAGGTCAAAACCCGGGGGCTTCCATACCAACTGCACAGTATATCAATAACCTTAGCCATGCCTCTCTTACCATTACTTTGCTATGAGAGAATGATGTGCCAAAAGAAAGTCCCACGCCATAATCAATATTCCATTTgagttgaaagtacatcaacatactgaaataaaagtctcagca

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155087

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00034726 lncRNA upstream 124 34661555 ~ 34663198 (+) True XLOC_017471
TCONS_00034724 lncRNA upstream 55058 34604947 ~ 34608264 (+) False XLOC_017470
TCONS_00034710 lncRNA upstream 269319 34392779 ~ 34394003 (+) True XLOC_017465
TCONS_00036617 lncRNA upstream 322139 34326878 ~ 34341183 (+) False XLOC_017463
TCONS_00036618 lncRNA downstream 96981 34761743 ~ 34766443 (+) True XLOC_017475
TCONS_00036619 lncRNA downstream 99688 34764450 ~ 34765817 (+) True XLOC_017476
TCONS_00036620 lncRNA downstream 268462 34933224 ~ 34956040 (+) False XLOC_017481
TCONS_00036621 lncRNA downstream 297392 34962154 ~ 34965993 (+) True XLOC_017482
TCONS_00034741 lncRNA downstream 320361 34985123 ~ 34985782 (+) True XLOC_017483
TCONS_00034718 mRNA upstream 19240 34543365 ~ 34644082 (+) False XLOC_017470
TCONS_00034720 mRNA upstream 19240 34596205 ~ 34644082 (+) False XLOC_017470
TCONS_00034725 mRNA upstream 49729 34605044 ~ 34613593 (+) True XLOC_017470
TCONS_00034722 mRNA upstream 54715 34604220 ~ 34608607 (+) False XLOC_017470
TCONS_00034723 mRNA upstream 55368 34604228 ~ 34607954 (+) False XLOC_017470
TCONS_00034728 mRNA downstream 6624 34671386 ~ 34700654 (+) False XLOC_017473
TCONS_00034729 mRNA downstream 6634 34671396 ~ 34700654 (+) True XLOC_017473
TCONS_00034730 mRNA downstream 52641 34717403 ~ 34734022 (+) True XLOC_017474
TCONS_00034731 mRNA downstream 105435 34770197 ~ 34783743 (+) True XLOC_017477
TCONS_00034732 mRNA downstream 127404 34792166 ~ 34794465 (+) True XLOC_017478
TCONS_00034653 other upstream 2192868 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2230855 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 2939825 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 3276151 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 3440295 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034740 other downstream 278609 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 398044 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 615234 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 717676 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 757936 35422698 ~ 35422827 (+) True XLOC_017490

Expression Profile


//