RNA id: TCONS_00034720


Basic Information

Item Value
RNA id TCONS_00034720
length 8929
RNA type mRNA
GC content 0.48
exon number 35
gene id XLOC_017470
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34537736 ~ 34644082 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCAGGAGTCAACCGCCGTTCCTGCGCATTAAATTTGTATTATATCTTGTACAAACTGGTATTTTGACACCCCTCTTTGTTCTGGAAATAGTACGCGCcattttgtctctctctctcttttcttgcCACATCGTCCGCTGCTCAGCTGTGTGTACATTATACACACAAACTGCTGTCAAACCTTCTAGTGTGACGACCCGGGGATAGAATATGATATTATTTCCGTTTATACTCCGGGGTAATGGCGGTTATATAAAATGACACGTTTTTCAAACTGGAGTCGGACGGTGGGATTTAACTGATGTCCTGTCATGTCGGCGTCTTCACAGAAGAGCGAATGAAACGTAATCGGGAACGCGCGGGTGATGGACAAAACACGCGTCTTCATCTCTTCTGACGAGGACGAGCATCTCGACATCAAATTCGAGTTTTGTTTGCTGCTGTAAATCTGCCTAAAGAATGACCTCAGTGACATAATTAAGGACGTTTAATATTACAAGACAGAGGGTTGAATGGAATGAATTAAAGGCCTTATCTCATCTGTGATAAACAACCTGACTTAAAATTATAGTATctttaaatcaataaatagtaGTACATTTTAAAACCATAGATGTCTTCCTTTTCATTGGTGGACATTAAGGAAGAATTGAAAAGAAGGAACTTTACATGCCATGAGATTTTATTTCACTTTCACTCATGGTTTAAATTTGAAACAATCTTTAGTTTGTTATTCAATTGAATATTTATGATGTTGGACTCAAAGAGTAAGGACGTGTGTCGGATTTGTGCAAGGGAGCTGTATGGTAACCAGCGGCGATGGATCTTTCACCCAACTGCCAAGCTGAGTCTGCAGGTGCTGCTTTCCTATGCTTTGGGCAGAGAAATGACCCGGGATGGCCGAGGAGAGTTCGCCTGCAGCAAGTGTGCCTTCATGCTGGACAGAATGTACCGATTTGACACTGTGATCGCCAGGGTGGAGGCCTTATCCCTGGAGCGGATGCAGAAGCTCTTGTTGGAGAAAGACAGGCTCAGGCAATGCATCAGTGGACTGTACCGCAAAAACAACACTGATGAATTGGGAGTGGATGGAGGTGCCACAGACGCTACTGTGGTGGACTTTGCCAGGTTGGCCGAAGCTGAATACAGTGCCCTCCTGCAGGAAGATCTCACATACTCTGTCTATGAGTCTTGGGCTGAGCAGTGCCCTCAAGAGCAGATTCAAGACCACCAATGCCCTCTTCACCATGCAGATGCCGCTTCAGGTCCACGTCCCAGGAAGTGTAAAGGCTGCGCTGCATTGCGAGTGACCGATTCAGATTATGAGGCTGTCTGCAAGGTTCCCAGAAAAGTAGGTCGGAGCACTTCCTGTGGGCCCTCCACACGGTACTCTGGTAGTGTTCAGGACAACACTGAAGAGACTGTCCCATCCGCTCCTCCACCAGAACCCATCGAGAACAACCAATCATGTGAACTAAAGCCAGTCGGAGTGAGTCCTGCCTCCTCTGTGGAGTCTTTGGACACTGCTGTAGATGTTACCCAAGAATCTTATCTAAAGCTCCCACTTCTAGAGTCTGAGGAGGAACAATCTGTTGTCAGAAGGCCCGAGTCCAAACCTGGTTCTGTGTGTGGCCTTGATGTGGCCCTAAGCCTGCTTAAAAGCTGTGAATATCACCCTCTCCAGAGCCAGAGAGGAAGCCGGATCCCTGTGCTCCTCAAAACTAATACTACACCCATGGAAAGCCCTTACCCTCTGCTGCAAGTGCCTCACATTGAGATGGAGTGTCCACTTTTCCCCCAGCTTCCAGATGTGCCTTCCAGCATTCAGCAGGAGCTTCAGCTGGAGCTGGCAGAAATGGAAGACCAGTGGTTGGATGATTATGTGCAGTGCAAGCCATCAGGCCTTCCGAAGAGGTTGATTGAGGAGCAGCAATGTCATCTGGCGGAGTATGAAAACGCAGCGGGACAGTGTGTGAATGAGCTGCAGAAGGCCCAACAGCAGGTGCAGTCTCTCCAGACCAAGATCCGAGACAGTGAAGCCAGTAATAAGaagttACAGCAGAAGCTTCGGGACATGGAAAATGAACTACGCTCTGTCAGAGAAGCAGCATGTGGTCAGGAGACAACAATACAGACCTTGGGTGACTCACTCAGTACTAAAGACTATGAGCGGGTCATTGAGGAGCAGAAGGAGCTTCTGTGCTCTCTAAAGCAACAGAACAACCATTACCAGCTTCAGCAGCAGCAGGTGTCTGGAGTTACTCCTAGTCATCTGCAGGCTGATCTGCTGGACCTCCAGGGCTCTCTGTTCTCAGCCCAGCTGGAGCTCCAGGGCCTTCAGAGGACACAGCAGCAGAGCCAGAGGAGGGAAGACGACCTGACCCGTGCAAACCAGCGCCTCCAAACTGACCTGCAAGGAGCCGTACAACGACACCGGGAGGCAGAGAAGCACAACCAGGACCTGCTGACTGCTCTAGAGAGCGCTCGAGCCAAACTACTGCAAACAGAGGAAAAATGGAGAGATGAAGGAAGACAGAGAGAGAACGAGGTGGAGGAAAGAGAGAAGACCATCCGAGAACTGAAGACCTCACTGGAACACAAAGAACGTCTGGTACAAGACTACAGTGAGCTGGTGGATGGTCAGAAAGAGCCTGCTGGGAATAGAGACAACCTTATTCAAAAGCTCAAACAACGAATTCAGGAAAGAGATCGGGCACTGGagCGTGCTGTAGACGAGAAGTTCACCTGCATGGAGCAGAAGGAAGACGAGATGCGTAAACTGCAGCTGTTGctgagagagaaggagagagaccTGGAAAAACTTCGATGTGTGCTGTCCAACAATGAGGAAACCATCATGAGTCTGGAGATGCTGCTGCGTGGTAAAGGTTTGGAGCTGGAGCAGGTGTGTGAGGCCTGGCGCAGTGCTCAGGGTGTTCACAGTGAAAGAGAAGAGTCATACATGCGCAGCCTGAGGGAAAGAGATGCTTTAATCAGTCAGCTGCAGACTTCACTGCACACTCGCACCAAAGAGGCAGAGGAAATGACTGCAGTTTTGCTCAGTAAGGTGTCAGTCGGGGCCGGTGAGGTGGCAGAGGAGCTCAAGTCTCGGCTGCAGCTGAAGGAGCGCTTATTCCAGGAGCTTCTTTCAGACCGCAGCAGACAGACTCAAGAGCATCACTCACAGGTCCAGGACCTGCTCAACACCATCAGCTCAAGAGAGCATTACATCAAGGATTCGGCAGGGCGTGTAGGTCAGGTTATGGCCGAACAGACAGCTCGATTGCAGGAGCTACGAAAGCAACTCGGGTCAGCAAACCCTGAGTTGACCCAAGAAGACACACAAGCACTTATGGATGAGCTCCAGATGACTCTGCGCAGAGAAAGAGAAGCCCAGACCCAGCTCAGCATCCTGCGTGCCACCTTAGCATCCTACCAAGACCAGCTCCAAACCCAAACCTCAGATCTAGATGCCTTGAGCAGGACAGCGAGCGTCAAAGAGGAAATCATCAAGGACCTTCAGATGCAGTTGGTGGAGCCATCTGATTTACCACTGGTAGAGCGACTGACTCAAGAGCTGCAGCTGCTGAGAGAGAAGGTGGAAAGTCAGGAAGCGTCCTGCAATAATCACAAggCTCTTTTGGATCCATTGGTGTCCATGGAAACAGGACAGGCAGTTCAACCTCATGCTGATTTTGGAGGTTTCACTTCAGATgatggagaggaggaggaggatgaagaagaCTGCAATAGTGAGTTTGCAGGCAGCGGTGAAGATGAAAAGCGATCCAAACGGACAGCTCAGTCTCTGGTCAGCTTGCAGAGCTGTGATCAGCACCAGGGTCTCAGAGGCTGTCAGGATGCAGTAGCTGAAGGTCCAGGTCTGGCGGAGGTCAAACAGCTGGTGGAGCAGAAGAGGGCAGTAGAGAGAGAACTGATGGAGCTCAAGTCACAGCTGGAAAAGGCTGgtttctcctctctctctcagATGAGGAAAGCATTTTTCACTCTTCGCTCTCAAAACGAGGAACTCAAGGGTTTAATGAATCTTCAAAATGTTGGACAGAAGAGCACGTCCTGCGGGCAGCTGGTGGATACAGTTGGTGCAAAGGGTAAGGAAAGGGAGTCAGCGAGGGAGCAGACGGTGCAGCTGAAGTCTGACCTTGCACAGGTCCAGCAGGAGAGCAGAGAACTGCAGGAGAGACTCATGGTGTCTGAGGCCACAGTTCAAGCTCAAGCCGAACAGCTCAAAGACTACAGAGAACTCCTCACGGAAACATCGGTACAGCAGGACAGTAAGCAGGTCCAGGTGGACATTCAGGATCTGGGCTATGAGACGTGTGGCCGCAGTGAGAACGAGGCCGAAAGAGAAGACACCAGCAGTCCAGAGTTTGATGATCTGGAGCTCTGCACATCTCTCTCCTATCGGGATGCTGGCTCTCAGTGGTGGGCTGGTCCCGCCACACACAACTCTGGGAAACCTGAACATGATGTGACGTACCTGCAGCAGCTGGTGGAGGATCTGCGTGGTCAACTGTCGCGATCTCAGGCTCTGATTCGCAGCCTGCAAGCCCAGATGCGTGATTGCACTCCAGTCGGCACTCCTCGCAAGGTCAACTGGGGCCTGGATAACTCTGAGACGCAGAGTACAGCTGAAGAGGACGAGGGCTGGCAGTCGTCGGACGGTTTCGGGTCACTGCCACGGCAGCCCAAGCAGGACCGAGAGCTGCAGGAGCTCGTCTCACGTGTGACGTCACTGGAGGAGCAGCTCAGGAAGGGCAAAGGTCATGCAGATGATGGCAAAAATGGAAACTGGCCGGGTAAGTTTGACACGCTGATCCAGGCCCAGGCCCGTGAGCTGTCTCACCTGCGGCAGAAGATGCGGGAGGGCCGTGGCATGTGCCACATTCTGACCCAGCACCTCGGAGACACAACCAAGACCTTTGAAGAGCTTCTGCGCTCCAATGACATCGATTACTACATGGGCCAAAGCTTCAGAGACCAGCTCTCTCAAAGCATCTCGCTCGCACAGAGAGTCAGCACCAAGATCAGCGGTCGTAAGTCACAAACATACATATCTCAATTCTCGTACAAAAACATTGCACTGAATTATTTCATCCTCGCAGGAGATCACTCTGAAGTCCCAGATGATAAATCAGGCCATGAGCTGCTTGCAATACGGCTGAGCAAGGAGCTTCAACAGAAAGACAAACTCATCGAGTCTCTACGGTCCAAACTTGACCAGCAACAACCCCGGTCAGATACACCTACAAGCAGTCATGCTTTCTCTGTAGCCACAGACCAATCGGATAGGACATCCTTTGTGTCAGATGACCACGGCTCAACCAATGAGGATCTAGAATTATGCTCTGAACTGGATGCTGCCAGTGAATATGGCCAAGAAGAGGCAGCAAGAAGTGCCACAGACCCACGCAATAATAGAGGCTCAGTCTTGTCACATCCATCCAATCCTCCATCTATCACTTCCTCTCACAGCCACAAGTCCACCAACACCTGTCCTAGCATACACTGCACACCACGTAGACCATTGGAAACCCAGGAACAAACAGTCAACATACCCAATGAAGTTAATAGCCGTGAGTCAGTAGCTCTTTCTCTCTGTGCCCTACCATCAGGCCTCACTACTGTACCTCTGTCCAACTCCATTCCTTTCTCCGCCTCCCTCCACTGTCCTCAAATGTGCTCTCAGCCTGTGTTTGACCCTCATGTTCACCCCTTGAGAACCCGTCACCCTTATGGTGGGGGATTCTCACTGGCAGAGGTTCACCAAGAGCTTCAGATGCTCCAAAGACAGCTTGGAAACAGTTATCATGGTCCTCAGATGAAACCTCTTCCTGCATTTCCACTGGGACCCCATGCTCAACCTGACCATAGCAGTTTACATCCACTATCCCATCATGCCTTTGAACAGTCACCTCTCAACAGCCAGCACACAAGTCCTGCTATGAAATCAGGGTCAAGCCTTCTGGAGAGCAGTGCAATGTGGGATATGATGTATAGCCCAAGACCTTTAAGACCAGGCCCATATGGAGATGTGTCCTCTGGTTCTTCTGGATATCAGTCAGGACACACAGGGACAGACTTAATGGAGGAGCACCTTAGGGAAATTCGTACTCTCCGACGGCGTCTTGAAGACTCCATCCAGACCAATGACCGCCTGAGACAACAGCTGGAGGAGAGACTGGCCGCTTCTGCAAGAAACGGAGGAGCAGCGCCCACTAACATCTATATTCAAGGCCTTGATTCTGTCAGTCAGCTGTCCAATGAGATTCGAGTGCTGAAAGAGGAAAATCACACTCTGCAGAACCAACTCCAGCAGGCCAGGACAGATGGCAGTAAAGAGATGGAGCGATTGAGAGAGGCGGTTCTTTCTGTACGTGGCCAGTTAAAGCAGGCGGAGCTTGAGGCAGACAAGTGGGCGGATCAGTGCAGGCGAATGCAGGCTCAGATTAGAGATCAAACTCAGACTGTACTGCAGCTTAAAGAAGAGAAACAGAACAGCCTGGACAACAGCACCAGGCTACAGCAGGAGGTGAATGTTCTCCAGCAGCAGTTGAGTGAGTGTCAGTGTCTAGTACACACACTGCAGTGTGAACTTCAAGTGTACAAGAGAGTCTGTGGCACTGCTGAGAGCAATGCAGGTTCAGGACTGACTTTGACCCTTGACCTGCGTGAGCGAGAGTCAAACATACAGTTGCTGGAACAACAGTTGAGAGAGAGGCTAGACCTTTGTATGCCTCACCCCTCAGCCAGAAAACAGCTCTTTCATGTAGACCAATCACCATCTCCTCCTGTTCGGGATACAGGGTTCTCCAGCCCTGCTTCACCAGCCATCAAACAGCATGACCCGAAGCCTTATAAGTATTCTGGTGCTGAAGGTCTGGAGGGTGAGGCACCTGACGGCTCCTTCGCCTGCAGGACAGGGCGCCATATGATCAGTCACGTGGACGacttcagtgtccttcaacagcAGTTACTGGAAGGAAAAGCAGTTATACGAAAAATGGAAGCAGCACTGCAGGCCAGCACAGAATCTCATGATCTACCAGAGGGTTATGTAAGGAACTTGCAGGTCAGCACTAAGACGCTGAAGCAGATCCTGGAGGAGACGAGCTCTCTTTTAAGAATGTTCTGGAGGGCTGCTCTGCCCAGCACTGAGACTTCAGCCCAGCAGCTGAAAAAGGAGCAGTCTTTGAGAAAGGAGGTCATCGCATTGAGGTGCAAGTTGTCAGAACAAGAGCAGCTTCTCAGGGACACGATGGAGAATCTGAGGGCCTCCAGTCAGACTAAAGACAGCATGGAGCAGTTCATCGTCAATCAACTCTCAAGAACCCGAGACGTGTTGAAACAGGCTCGCTCAAATCTAGAGAAGAATGAACTCAAGATTGCCTCTCTAGGTTTCACCCCTCTCCCTTCATCCTCCTTTTCGGTTTCCTCCACTCCCTCCTGGTCTGAGAGAGATGCGGTCTCAGGAGTCTCCCTCAAACATGCCTCCTCTCCTGGTTGGAATTTCGTGAAGCCTCACCTTCAGGATCAACACAAAATGATGACAGCCTCGTGACAGACATCATGTGCTGCAGAAAAGACTCCAGACTGAGAGTGCTGCCATCTCATATTAAAAGATCTCCAAGATCATGTAGAGATCTGTTTTATTTACAACATAACAGCCACCAAAAAGCTCTCAAAGTTGCTTTTGAGTAGATGAGTATTATGGACTTATTATTTGGATTTGCTGTCATGTCTTTAACCAAAGTGGCATCTCATGGGTTTATGTTTGGGTTTGTTTTGAACCAGCAACACTATTAATGTGCAATTATAATACTACTGTGCTACCAGCCAGACCTGCTACACTGTAAATGAAAGTCAACCCAGGGATGAACTGAAGACCGATGGTGCAATAATAGTTCAGTCAGCCTGCTACTGTAGTTTTGAAATTGGTATGTCCCAATACAGGATCTGTTCGTTTGTTATTTGCTGTTGCCAAAGTATGAGTCTGTTGCTTTTTATGAACTAACcctttgctgttttttttgtctCTGTAAATTTGAATCCCCCCATTTTGTTCCTATTTTTTTCTTGAACTGAAGAGTatctatgttttgttttgttttgttttttttggttttgtccaAAAAATAATCCGTGTTTTATATTTCTATCTGCTGTATCAGCTCTTTTTGATGGaccatttagttttattttatttgtttatttttgttttgtttcagattaaatttttgtttaattaatttttttttatttgttttgtttaattttgtcatttttttaatgttagacTTGCAACGTCTTTAACTAGGCTCCCATGAGATAAAAGAGACTAACTCAAAGCcattatttttaagatactaaggttacattattaaattattatcttTGTTAGACACTGCTGATCATTTTGCGGATGTGTGTAGCTTTTCTGTTTAATGTGGATTTAAAAGGAAGTCTGTTGCTCTTGCATGAACTGCACAACTTTATGCTCTCACTgacagtatttcagttttactGCTGTATTAAGACACATCCTGCGGTTTCTGCTGTATGTATGAACTGATCTGGTGCCATTTGCTTTGTATCTTGTTTGTATATGAGATGGCTGTTTGCTGCTCTTATAAGGTGAGGCGTGCACTGCACACATTATGATTATCTTATGAGAGAAAGGAGAGCTGTGGGTCATTTCAAGTCAACTTGCACTCGTTTTATGACAATCAAATATCTCTCAAATGTTTGTAACTTTTGGAAAATATTGGTAGCAATGCAGTTTGATTCACCtttgtaaattaatgtaaattgAGTGAGGTTTGTTTTTGAGAGGAATGCATGTGTACTTCAGGAAAATGTGTGTGAAGAAAACAAAAAAGGGACATTTTAATAAAAAGGGAAAAACAC

Function

GO:

id name namespace
GO:0005815 microtubule organizing center cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1518 Predicted to be located in cytoplasm and microtubule organizing center.

Ensembl:

ensembl_id ENSDART00000138338

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034710 lncRNA upstream 202202 34392779 ~ 34394003 (+) True XLOC_017465
TCONS_00036617 lncRNA upstream 255022 34326878 ~ 34341183 (+) False XLOC_017463
TCONS_00034705 lncRNA upstream 256623 34338325 ~ 34339582 (+) True XLOC_017463
TCONS_00034704 lncRNA upstream 258455 34334141 ~ 34337750 (+) False XLOC_017463
TCONS_00036616 lncRNA upstream 563008 34029836 ~ 34033197 (+) True XLOC_017460
TCONS_00034726 lncRNA downstream 17473 34661555 ~ 34663198 (+) True XLOC_017471
TCONS_00034727 lncRNA downstream 19240 34663322 ~ 34664762 (+) True XLOC_017472
TCONS_00036618 lncRNA downstream 117661 34761743 ~ 34766443 (+) True XLOC_017475
TCONS_00036619 lncRNA downstream 120368 34764450 ~ 34765817 (+) True XLOC_017476
TCONS_00036620 lncRNA downstream 289142 34933224 ~ 34956040 (+) False XLOC_017481
TCONS_00034717 mRNA upstream 3443 34537736 ~ 34592762 (+) False XLOC_017470
TCONS_00034719 mRNA upstream 3629 34582276 ~ 34592576 (+) False XLOC_017470
TCONS_00034715 mRNA upstream 75164 34511678 ~ 34521041 (+) False XLOC_017469
TCONS_00034716 mRNA upstream 76597 34512130 ~ 34519608 (+) True XLOC_017469
TCONS_00034713 mRNA upstream 88710 34501152 ~ 34507495 (+) False XLOC_017468
TCONS_00034728 mRNA downstream 27304 34671386 ~ 34700654 (+) False XLOC_017473
TCONS_00034729 mRNA downstream 27314 34671396 ~ 34700654 (+) True XLOC_017473
TCONS_00034730 mRNA downstream 73321 34717403 ~ 34734022 (+) True XLOC_017474
TCONS_00034731 mRNA downstream 126115 34770197 ~ 34783743 (+) True XLOC_017477
TCONS_00034732 mRNA downstream 148084 34792166 ~ 34794465 (+) True XLOC_017478
TCONS_00034653 other upstream 2125751 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2163738 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 2872708 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 3209034 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 3373178 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034740 other downstream 299289 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 418724 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 635914 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 738356 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 778616 35422698 ~ 35422827 (+) True XLOC_017490

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_09953481_09993079.mRNA True 10483 mRNA 0.49 45 CI01000325 9951157 ~ 9993099 (+)