RNA id: TCONS_00034715


Basic Information

Item Value
RNA id TCONS_00034715
length 2766
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_017469
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34511678 ~ 34521041 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCGACGCTTTACACACATGCATCTGAAAGGCATCAGCATTTCTGGATCGGCGCTCAGTCAACAACTCCGTGGAGCTCGAggagttttttttcttattgactACATTGACAAAAGAGATTACATGGCTCTGAGTAAACGGAATCAACAGACGTCGTGGTCATCACAGTCAcgttaagttatacaaagttttagACTAGGTTAACTCAACCTGGATCTGTAGGAGCTGCTTTCCTATAGGTAACGACCAAGAGACGGAGGCCCCGTTTTGAAGGCAATGACTATCTTGAGTTTGCCTTAAATATATGCAAGGAGGAACTGTTTTGGTTAGTATAATACACTTGCCAATTTTTATCGTATTTGCGTCATGACTTCTAGCTATGCACATGTAATGGACAGACAAGCAACCATATCCAGCAGACTGGAGAGTCCCATTACAGCCAACCTGGAAAACCTGCAAGCCAAAAAGAACTTCTCGGTGAGCCACCTGTTGGATCTAGAGGAGGCAAGAGAAATGGTCGGTTCTCAGGTGGATGAAAGTGTTGGCGAAACGGGCAGGACTATGCTGGAATCTCCGGGTTTAACGAGTGGCAGTGATACAACACAACAAGAGAatGAGCAGCTGAACTCAGAAGAAAAGAAGAAGCGGAAACAGCGGAGGAATAGAACCACGTTTAACAGCAGCCAGCTGCAGGCGCTGGAGCGAGTGTTTGAGCGGACACACTACCCAGATGCCTTTGTTAGAGAGGACTTGGCACGTAGGGTCAATCTTACTGAGGCTAGAGTTCAGGTGTGGTTCCAAAATAGACGGGCAAAGTTTCGGCGGAATGAGCGGGCGATGCTGGCCAGTAAGAACGCTTCACTTCTTAAATCCTATTCAGGAGACGTAACAGCAGTGGAACAGCCTATCGTGCCCCGACCCGCACCACGTCCAAATGACTACCTATCCTGGGGAAGCGCAGCCCCATACAGCACCATGGCAACCTACCCACCCACTTGTGCCAACACCACTTCCACCCAGGGAATGAATATGGCCAATAGCATTGCTAATCTGAGACTGAAGGCCAAAGAATACAACCTCAACCAGGTGCCTACTGTCAACTAAGCCTGAAAAGAGGGACGGAATGAGGGGACGTAAAAAAGGAAGACACACTGAGAAGAGAAGATCTCAGAAGAGCTGGACTGGTTTAGCGGTAACAGTGATTTTTCTGGCTTTCTGCAGTGTTAAAGCAGAGTGGATATGACTTTTGGCCCCCTCCTTAAACAATGAAATTGCGTTGTTGTCCCTCTCAATTGGCTTTTTTCTTCATCATAGATTAAGGTACGTTTTTGAGAAACTCAATCTCATTTTGTACTGATATGAAGATTGTAAAGACAGCACATGTTCTGCTTTTTGGAGATCAAATCAACGAGAAGGGCTCCGCTAAATCACAAAGAAGTGGCAGACGAAGTGCCTGGATGCTGTATGCTGTTCTTTCCATGTTCTTTTTGGCTTTATTTTGGGTCATCCGGATGGAAAGTAAAGAAACTTTCAAGGAACACAATGGAGGACTGTTTTGCGCCATTCACCACTGAATGGTTTAAATTACACCAGAATTTTAATGTGGAGATTTGGCAACAAAGTGGCTTAAAATGTCTCCACGTCTGCCTTTGGTAAAATAAAGACACATTTGTGGACTATAATCAGTATATGAGATGTTTACAACTGTCAGTGCTAACGGAAGCATTAGGGCCGGATTACATATTTTTAGGTCTGAATATTACACCACTCTTTAAGGTTAATACGGTTCCCCATGGTGACATATGTATCTGTTCACAGTACACAATTATGTTTCAGTTTTGCCACAGgtgactttttttcatttattttattttcttcttatatTTGGAAACTATAtagtaataaaacatttttaagaaatAACTCTTATGTTATTGTGATTGACAATCCTGCAGCTAAATAGATTGTGCCATTTTAGCTAAATACTCACATTTGAGGAGCTGTTGCAGGCAATAGTATTACTAGAATCAGGACCTTATTATAATATATCCACATGTAACATTTCCTGATTTATGTTAAACACCAGTGCTAAAAAATAAGTTGTGCAAATTAATTTAGTTCTATCTTATAAATGTTGAtggttataaacattttttattattatttgttctgAAACTATGTGAGAATGAAACtagatttttagatttattttatattaattaaacatttctgACCTGTTTTACAGGTAAATTCTTTTAATAGAAAACACTATCAGGAATGATTTTACAGCATGTTAAAtgcaatggctgtttttttttagctaatcCTGGTTGTGCTATAAATAAACTCTATTTCTTCCacttttaattaaaactaaattaaactggatttatataaatgttttgataaaagtttactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattataatcaagtaaaaaaaaattataatgaacaCCTCATCAGCATGTTATGATTAGATAATAGATGTAATACTCTCTTATTGTGCTGGGAGAACAATGTGATGAAAGGAATATTTGAGAATTAATTTCCACTGTAACCCAATCCTTTAAACTCAATATTTGTTGACTGTACATGCGAATGACATCGCTTTGCccaatttaaagcattttagttTCAAGTCcaacaaaatgtaaattaatttacaacAGTAAATGTGTTTGGAACGTGAA

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9033 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cranial skeletal system development and positive regulation of gene expression. Predicted to be active in nucleus. Is expressed in several structures, including mesenchyme; pectoral fin bud; pectoral fin field; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in agnathia-otocephaly complex. Orthologous to human PRRX1 (paired related homeobox 1).

Ensembl:

ensembl_id ENSDART00000061588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034710 lncRNA upstream 117675 34392779 ~ 34394003 (+) True XLOC_017465
TCONS_00036617 lncRNA upstream 170495 34326878 ~ 34341183 (+) False XLOC_017463
TCONS_00034705 lncRNA upstream 172096 34338325 ~ 34339582 (+) True XLOC_017463
TCONS_00034704 lncRNA upstream 173928 34334141 ~ 34337750 (+) False XLOC_017463
TCONS_00036616 lncRNA upstream 478481 34029836 ~ 34033197 (+) True XLOC_017460
TCONS_00034724 lncRNA downstream 83906 34604947 ~ 34608264 (+) False XLOC_017470
TCONS_00034726 lncRNA downstream 140514 34661555 ~ 34663198 (+) True XLOC_017471
TCONS_00034727 lncRNA downstream 142281 34663322 ~ 34664762 (+) True XLOC_017472
TCONS_00036618 lncRNA downstream 240702 34761743 ~ 34766443 (+) True XLOC_017475
TCONS_00036619 lncRNA downstream 243409 34764450 ~ 34765817 (+) True XLOC_017476
TCONS_00034713 mRNA upstream 4183 34501152 ~ 34507495 (+) False XLOC_017468
TCONS_00034714 mRNA upstream 7562 34502606 ~ 34504116 (+) True XLOC_017468
TCONS_00034712 mRNA upstream 45195 34455645 ~ 34466483 (+) True XLOC_017467
TCONS_00034711 mRNA upstream 92155 34400715 ~ 34419523 (+) True XLOC_017466
TCONS_00034707 mRNA upstream 112236 34388425 ~ 34399442 (+) False XLOC_017465
TCONS_00034717 mRNA downstream 16695 34537736 ~ 34592762 (+) False XLOC_017470
TCONS_00034718 mRNA downstream 22324 34543365 ~ 34644082 (+) False XLOC_017470
TCONS_00034719 mRNA downstream 61235 34582276 ~ 34592576 (+) False XLOC_017470
TCONS_00034720 mRNA downstream 75164 34596205 ~ 34644082 (+) False XLOC_017470
TCONS_00034721 mRNA downstream 75913 34596954 ~ 34607752 (+) False XLOC_017470
TCONS_00034653 other upstream 2041224 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2079211 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 2788181 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 3124507 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 3288651 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034740 other downstream 422330 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 541765 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 758955 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 861397 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 901657 35422698 ~ 35422827 (+) True XLOC_017490

Expression Profile

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