XLOC_017468 (gorab)


Basic Information

Item Value
gene id XLOC_017468
gene name gorab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34501152 ~ 34507495 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034713
GGTCTTGAACGTGGCAGTCTTTATACACAAACATGGCGGCCAGATGAGCTCTTAAAATTGTTACCGTATTTGTAGGTAAAAAGGAACATTTAAATCAACAACTATTTGTCTTTGCTAATGCCCGATTTACATTATAGCTGCGAGCAACTCTATAGTGTATTGAAAATGGCTGCTTGGGCTGGATTTTCAGAGGAAGAACTGCGAAAACTGCAGCACAACGGCGAAGTTGCAAATCAGGCTGTGTCTGTCACATTGGGTCGTGGCCGGGAACCTGCTCAGACTAACCGGAGCAGACAGCAGCTGCAGCGGGAGAGGGCTCTTCAGCTGGCGGCCAAACAGAAGGAGATCAGTCAGTCTCTTCTATCCGACCAACAGCTTACCAGACCACCAGAGCCACCAGCTTCCAGTCACCCCGCTCCTCCTGCTGAAACACCAGACGAGCAGTCAGTACCGGTCAAGCATGAGGCAGAACCTGTTAAGCCTGACCCAGCATCCCCTGTCCAGTCTATACCACCTGCAGACTTCAAGGAGCTTGACAAACAGGAAGTGGAATTGCGGGAGAAGAACCGTCTGCAGCAGTTGCAGTGGGAACAGAGGATCATGGAAgagaagaataaaaaaagaaaagctctcctTACAAAGACTATTGCTGAAAAGTCTAAACAGACACAGGCTGAAGCCATAAAACTGAAGAAGATCCAGAGAGAACTTCAGGTGCTTGATGATTCTGTGTCCAGTGACATTGGGGTTCTCAGAAAACTGATCGAGCAATCCAGCATGGATTATTCCCTGGCatgGAAGCGCTTTGAGAAAGCAGAGGCTGAGTATGTTGCCGCTAAGATGGACTTGCACAGGAAGACCGAGGTGAAAGAGCAGCTGACAGAGCACCTGTGTGCAATCATCCAACAGAACGAGCTGCGCAAGGCCCGCAAACTGGAAGAGCTGATGCTGCAGCTGGAGCTAAATGCTGAGGAAGTGCCCAGTCCAGATCAAACGCAACTACAGGACAAACAGAAAGAGCCTGTTACTGAGAACGGTCCTGCAGCAGAGCTGGAGAGATGTACAGAGGCGAATGGCTCAAGTATGAGCAAAGACAGTTCCATTACAGAAACCAAGATCAGCCAAGACAATCAGGAGAGTGAAGCAGCAGATGTTTCAGCAGATGGGCTTCGCTAGCTTCCAAGCATCATTAATTTAAAAGAGGCTTCATAACGCTTTACATAACACTTGCTACCAGCTTTACAAATATCTCTATTGTGTGAGAATGCTGAACAAAAGCAATGATcctatatttctttatttaaacatttttggcATTTTTGGATTATACAAAAGCCATGTTGGTGTCTTCTCAAATGCCATGAAGGTAATTCCATTACTACTAACGCTAAAATGCCTTGGCATTATGGGACTCAGATATTGATTGTGATTGTTTTCATTTAAACTGTTACTTGATCCTGAATGTGAGGAGTTAAAACAATGCTGCATCCTTTTATTGTGCTTCATCTGGATGTCATTGTATAATTTAATCTGTCTTGCATTAAGAAAATGGACCACAAATCTCTTGAAAACACTACATTAAATACTAAATACTGTTAATTTTATATCGTTCCATAACTGTGACACTATTCAAAATGAATTAGTGGCAGGCGGTCTGGTGGTAGTTTGTAGTCATGATTTATTTCACATGATGTTGCACAAGTGTATGGTGGGATCTTTTATCTGTATATGGTGGTTGTCTCATAAAAGTAACGTTATGCGAATGTTAACAAATcaataacagcagttttttttttcttgcaaagcTGATGGTTTACTCAGCAGAGATTGTTTTGTACAGTATGAGGGAAAATTCTATTGGAGTGTGAAAAGTATATAGAATTTAAAAATCTTGTCAAATGCTCTTATAGAGCCCGTCATCAACtatgaaaacattttatataatggtcaggatatttatttttaaaaaaggtttaggatatgacttttttttttttttaagtaaattgtaATGTCTTTCGTTTCATTTCATGCGTGCACGAATGGGTGTCAAGgcatatacatattttaatggttaaataaaatatttaaatatca
>TCONS_00034714
CAAATCAGGCTGTGTCTGTCACATTGGGTCGTGGCCGGGAACCTGCTCAGACTAACCGGAGCAGACAGCAGCTGCAGCGGGAGAGGGCTCTTCAGCTGGCGGCCAAACAGAAGGAGATCAGTCAGTCTCTTCTATCCGACCAACAGCTTACCAGACCACCAGAGCCACCAGCTTCCAGTCACCCCGCTCCTCCTGCTGAAACACCAGACGAGCAGTCAGTACCGGTCAAGCATGAGGCAGAACCTGTTAAGCCTGACCCAGCATCCCCTGTCCAGTCTATACCACCTGCAGACTTCAAGGAGCTTGACAAACAGGAAGTGGAATTGCGGGAGAAGAACCGTCTGCAGCAGTTGCAGTGGGAACAGAGGATCATGGAAgagaagaataaaaaaagaaaagctctcctTACAAAGACTATTGCTGAAAAGTCTAAACAGACACAGGCTGAAGCCATAAAACTGAAGAAGATCCAGAGAGAACTTCAGGTGCTTGATGATTCTGTGTCCAGTGACATTGGGGTTCTCAGAAAACTGATCGAGCAATCCAGCATGGATTATTCCCTGGCatggtgattattattattacagtctATTCCATGAAAACAAAACAGAGATTTCAGCAGCTTCTTGTTGAAAGTGTCACTTTGTTTAAagtatgtcactttaaaatagtAGTTGGCCAAACTGAGTACTACTGAtctgattattaatattaatactggATATAGTACATTGAATCTGTTAATTCAGGAGTGAAAATGCTGCCCTCTGTAGCCTCTATATATCAATTCAACTAAATTATGAACAAGACAACTGCATGTGCATGTGAATTATTACTTGTAACTTTTGCACAATTTACACTTTTCACACAATATTGctccttttgaatttttttttgcaataaagtttaacatttttaaatgac

Function

symbol description
gorab Predicted to be involved in non-motile cilium assembly. Predicted to be located in Golgi apparatus. Is expressed in notochord. Human ortholog(s) of this gene implicated in geroderma osteodysplasticum. Orthologous to human GORAB (golgin, RAB6 interacting).

GO:

id name namespace
GO:1905515 non-motile cilium assembly biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04115 p53 signaling pathway
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1384 Predicted to be involved in non-motile cilium assembly. Predicted to be located in Golgi apparatus. Is expressed in notochord. Human ortholog(s) of this gene implicated in geroderma osteodysplasticum. Orthologous to human GORAB (golgin, RAB6 interacting).

Ensembl:

ensembl_id ENSDARG00000042031

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034713 False 2097 mRNA 0.41 5 34501152 34507495
TCONS_00034714 True 924 mRNA 0.43 3 34502606 34504116

Neighbor

gene id symbol gene type direction distance location
XLOC_017467 mettl11b coding upstream 34669 34455645 ~ 34466483 (+)
XLOC_017466 niban1a coding upstream 81629 34400715 ~ 34419523 (+)
XLOC_017465 trmt1l coding upstream 101710 34388425 ~ 34399442 (+)
XLOC_017464 znfl1k coding upstream 121496 34374735 ~ 34379656 (+)
XLOC_017463 ivns1abpa coding upstream 159969 34320635 ~ 34341183 (+)
XLOC_017469 prrx1b coding downstream 4183 34511678 ~ 34521041 (+)
XLOC_017470 si:ch211-242b18.1 coding downstream 30241 34537736 ~ 34644082 (+)
XLOC_017471 BX279523.2 coding downstream 154060 34661555 ~ 34663198 (+)
XLOC_017472 BX279523.3 coding downstream 155827 34663322 ~ 34664762 (+)
XLOC_017473 elp3 coding downstream 163891 34671386 ~ 34700654 (+)
XLOC_017455 BX296562.2 non-coding upstream 525860 33959570 ~ 33975292 (+)
XLOC_017441 NA non-coding upstream 1442608 33057784 ~ 33058544 (+)
XLOC_017440 NA non-coding upstream 1651049 32827420 ~ 32850103 (+)
XLOC_017433 CU138515.1 non-coding upstream 2030698 32466886 ~ 32470454 (+)
XLOC_017431 BX927123.1 non-coding upstream 2098792 32270907 ~ 32402360 (+)
XLOC_017475 NA non-coding downstream 254248 34761743 ~ 34766443 (+)
XLOC_017476 NA non-coding downstream 256955 34764450 ~ 34765817 (+)
XLOC_017482 NA non-coding downstream 454659 34962154 ~ 34965993 (+)

Expression


Co-expression Network