RNA id: TCONS_00034731


Basic Information

Item Value
RNA id TCONS_00034731
length 3062
RNA type mRNA
GC content 0.49
exon number 17
gene id XLOC_017477
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34770197 ~ 34783743 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATTCCACTGCGAGAGAAGTCTGGTGGCGCGAAAAGGCACACAACAGTGCTGCGACAGACACGAGGTGTTCTGCACTGAACTTTTCTCCATACTTTTAAAAGATCTGTAGCAAAAATGGCTGCTGAAGTTGTGGACGATCAGGAAATGAGGGAGGCTCAGAGGGATTACTTGGATTTTCTTGACGACGACCAAGACCAGGGCATCTACCAGAGCAAAGTACGGCAGATGATCAGCGAAAACAAATCCAGGCTCATTGTAAACCTCAACGACCTGCGACGACGAAATGAAAAGCGAGCAGCAAAGCTGTTGAATAACGCTTTTGAAGAGCTCCTGGCATTCCAGCGAGCCCTGAAAGATCTGGTGGCTTCAATAGATGCCACTTACGCCAAGCAATGTGAGGAGTTCTTCATTGGTTTGGAGGGCAGCTTTGGCAGCAAACATGTCTCCCCTCGAACCCTGACCTCTCGCCTGCTGGGCAGCATGGTGTGTTTGGAGGGCATCGTCACTAAATGCTCTTTGGTGCGTCCCAAAGTAGTACGCAGTGTGCACTACTGTCCAGCCACTAAAAAGACCATGGAGCGCAAATACACCGATTTGACTTCTCTGGATGCCTTCCCTTCAAGTGCCATTTACCCCACCAAGGATGAAGAGAACAATCCATTGGAGACAGAGTttggtctgtctgtctataaGGACCaccaaaccatcactatacaggAGATGCCGGAGAAGGCCCCTGCTGGTCAGCTGCCCCGCTCTGTGGACATCATCCTGGACAATGACCTGGTGGACGCCGTGAAGCCTGGAGACCGAACACAGGTGATCGGCACCTACCGCTGCCTGCCGGGCAAGAAGGGTGGCTTCACCTCGGGCACCTTCAGGACCATCATGATTGCCTGCCATGTCAAACAGATGAGCAAAGAAATTTCCCACTACTTCTCTGCGGATGATGTGGCCAAAATCAAGAGCTTCTGCAGGTCTCGCTCTAAGAATGTGTTTGATCAGTTGGCTCGCTCTCTGGCCCCCAGTATTCACGGTCATGAGTACATAAAGAAGGCCATCCTGTGCATGCTTCTAGGAGGAGTGGAGAAGGTGCTGGAGAACGGTTCGCGTATTCGAGGAGACATTAACGTGCTTCTCATAGGTGACCCATCAGTGGCCAAGTCTCAGTTGCTCCGGTACGTTCTTCACACTGCTCCTCGGGCCATTCCCACAACAGGCCGTGGTTCATCAGGTGTGGGTCTGACCGCAGCCGTCACCACTGACCAGGAGACAGGCGAGCGGCGTCTGGAAGCTGGGGCCATGGTTTTGGGGGATCGAGGCGTTGTCTGCATTGACGAGTTCGACAAAATGTCAGATATGGATCGCACTGCTATACATGAAGTCATGGAGCAGGGCCGAGTCACCATCGCTAAAGCTGGCATCCACGCTAGACTTAATGCCCGCTGCAGCGTCCTGGCAGCTGCCAACCCCGTCTACGGCAGATATGATCAGTATAAGACACCCATGGAGAACATCGGTCTGCAGGACTCTCTGCTGTCTCGTTTTGATCTGCTCTTCATCATGCTGGATCAGATGGACCCTGAGCAGGACCGCGAGATCTCGGACCACGTGCTGCGTATGCACCGCTACAGAGATCCACATGAGCAGGACGGGACAGCTCTTGCTCTTGGTGGTACAATCGATGCTTTGGCCACGGAAGACCCTGATGCTAcgcaggaggaggaagaggagctcCAGGTTTACGAGAAACACAATCCACTCCTCCACGGCAGCAAAAAAAACAAggATCGAGTAGTGAGCAAAGCCTTCATGAGGAAGTACATCCATGTCGCCAAAGCCATTTCTCCAGTTTTGACCCAAGATGCAGCCAATCACATCGCAGAGGAATATTCACGACTGCGCAACCAGGAGCAGCTGGGCTCCGACATCGCACGGACGTCACCGGTCACTGCCCGAACCCTGGAGACTTTGATCCGTCTGTCCACGGCTCACGCTAAAGCCCGCATGAGTAAAGCTGTGGAGCTGGTGGACACTGAAGTCGCCGTGGAGCTCGTGCAGTTCGCTTATTTCAAGAAGGTTTTGGAGAAGGAACGTAAACGCTCTAGAAATGGACAGCAGGATGCTGCTTCAGAAGACGAGGAAGAAGAGGAAGATGAAGCTCAAGACACACCACGACCACCCAGAAAAAGGCGCAGGGGATCTCAGGGAAGCGAGTCTTATGACCCCTATGACTTCAACACTGAGACTGATATTCCACAGAtTCAGTCTCCGGCTCCTGCGTTGCAGGCTGATGAAGAGCCTGATCAGAATGGCCACACAGAGTTGTCTGAGGACAGGTTTAAGGAGTTTAAAGCGGCTCTGCATAAGGTTTTCCGCTCTTCTCACGCTCAGTCGGTGGGTTTGATTGCTCTGATGGAGAGCATCAACAAGTCTTGCCCATCAGCGTTTAATGAAACAGACTTCCGGGCTGCTCTCGCGCGCATGCAGGACGACAACCAGGTCATGCTGGCTGATGACATCATCTTCCTGATTTAAACATCTTTTCTGGACAATATCAGTGATCCTCCTGTTCTTGCATTCATCTGTTTCAGAAGATCTGCAAtatgtttgctttgtttattacCATACTGTTGCAAGCATTTCTAAAACTAACTCTCTTCAACATTGACAGTAAATTGTTTGCTGTCTATTATTTTTCGCATGCTCATCTATGCGAATATTGGCATTCAATGAAAAAATAACTAGGTTGTATTTTTGCCAAGAAATGatagtttctttttatttctaaacagGCATGTTTCATGTTTTTCAACATACTCAAACCTGGCTTATGTTCTACAGAAATGAGCTTTCTGGTTGTATTTCTTCCTTTATTAAatggttgttttttgttttattaatggcttgtaaatacagatgtttttaaaTACAGATGTTCCAAactaagaaaaaatacaaattcagAAAAATGATAATGGTCAACATTTGTTTTCTGTACTTATTCCAATATTTCTTGTCTAGTCTGTTGCCTTTGTCAATAAAATTGTCAAAAATGAA

Function

GO:

id name namespace
GO:1902975 mitotic DNA replication initiation biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006260 DNA replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0006270 DNA replication initiation biological_process
GO:0006271 DNA strand elongation involved in DNA replication biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko03032 DNA replication proteins
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-020419-4 Enables chromatin binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in chromosome. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and pectoral fin musculature. Orthologous to human MCM3 (minichromosome maintenance complex component 3).

Ensembl:

ensembl_id ENSDART00000018304

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036618 lncRNA upstream 3754 34761743 ~ 34766443 (+) True XLOC_017475
TCONS_00036619 lncRNA upstream 4380 34764450 ~ 34765817 (+) True XLOC_017476
TCONS_00034727 lncRNA upstream 105435 34663322 ~ 34664762 (+) True XLOC_017472
TCONS_00034726 lncRNA upstream 106999 34661555 ~ 34663198 (+) True XLOC_017471
TCONS_00034724 lncRNA upstream 161933 34604947 ~ 34608264 (+) False XLOC_017470
TCONS_00036620 lncRNA downstream 149481 34933224 ~ 34956040 (+) False XLOC_017481
TCONS_00036621 lncRNA downstream 178411 34962154 ~ 34965993 (+) True XLOC_017482
TCONS_00034741 lncRNA downstream 201380 34985123 ~ 34985782 (+) True XLOC_017483
TCONS_00036622 lncRNA downstream 228891 35012634 ~ 35014502 (+) True XLOC_017484
TCONS_00034746 lncRNA downstream 392084 35175827 ~ 35177842 (+) True XLOC_017486
TCONS_00034730 mRNA upstream 36175 34717403 ~ 34734022 (+) True XLOC_017474
TCONS_00034728 mRNA upstream 69543 34671386 ~ 34700654 (+) False XLOC_017473
TCONS_00034729 mRNA upstream 69543 34671396 ~ 34700654 (+) True XLOC_017473
TCONS_00034725 mRNA upstream 156604 34605044 ~ 34613593 (+) True XLOC_017470
TCONS_00034722 mRNA upstream 161590 34604220 ~ 34608607 (+) False XLOC_017470
TCONS_00034732 mRNA downstream 8423 34792166 ~ 34794465 (+) True XLOC_017478
TCONS_00034733 mRNA downstream 61929 34845672 ~ 34865031 (+) False XLOC_017479
TCONS_00034734 mRNA downstream 62254 34845997 ~ 34864519 (+) True XLOC_017479
TCONS_00034735 mRNA downstream 85190 34868933 ~ 34902205 (+) False XLOC_017480
TCONS_00034736 mRNA downstream 86774 34870517 ~ 34886102 (+) True XLOC_017480
TCONS_00034653 other upstream 2299743 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2337730 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 3046700 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 3383026 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 3547170 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034740 other downstream 159628 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 279063 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 496253 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 598695 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 638955 35422698 ~ 35422827 (+) True XLOC_017490

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_10077265_10086696.mRNA True 3024 mRNA 0.48 17 CI01000325 10077265 ~ 10087272 (+)
bowfin (Amia calva) AMCG00003720 True 3225 mRNA 0.55 17 CM030121.1 16258454 ~ 16265698 (+)