Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034728 |
| length | 2126 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 13 |
| gene id | XLOC_017473 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 34671386 ~ 34700654 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0002098 | tRNA wobble uridine modification | biological_process |
| GO:0002926 | tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0033588 | elongator holoenzyme complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0000049 | tRNA binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016746 | transferase activity, transferring acyl groups | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0051536 | iron-sulfur cluster binding | molecular_function |
| GO:0051539 | 4 iron, 4 sulfur cluster binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0008607 | phosphorylase kinase regulator activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0008080 | N-acetyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050327-35 | Predicted to enable phosphorylase kinase regulator activity and tRNA uridine(34) acetyltransferase activity. Acts upstream of or within axonogenesis and somite development. Predicted to be part of elongator holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human ELP3 (elongator acetyltransferase complex subunit 3). |
| ensembl_id | ENSDART00000152836 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00034727 | lncRNA | upstream | 6624 | 34663322 ~ 34664762 (+) | True | XLOC_017472 |
| TCONS_00034726 | lncRNA | upstream | 8188 | 34661555 ~ 34663198 (+) | True | XLOC_017471 |
| TCONS_00034724 | lncRNA | upstream | 63122 | 34604947 ~ 34608264 (+) | False | XLOC_017470 |
| TCONS_00034710 | lncRNA | upstream | 277383 | 34392779 ~ 34394003 (+) | True | XLOC_017465 |
| TCONS_00036617 | lncRNA | upstream | 330203 | 34326878 ~ 34341183 (+) | False | XLOC_017463 |
| TCONS_00036618 | lncRNA | downstream | 61089 | 34761743 ~ 34766443 (+) | True | XLOC_017475 |
| TCONS_00036619 | lncRNA | downstream | 63796 | 34764450 ~ 34765817 (+) | True | XLOC_017476 |
| TCONS_00036620 | lncRNA | downstream | 232570 | 34933224 ~ 34956040 (+) | False | XLOC_017481 |
| TCONS_00036621 | lncRNA | downstream | 261500 | 34962154 ~ 34965993 (+) | True | XLOC_017482 |
| TCONS_00034741 | lncRNA | downstream | 284469 | 34985123 ~ 34985782 (+) | True | XLOC_017483 |
| TCONS_00034718 | mRNA | upstream | 27304 | 34543365 ~ 34644082 (+) | False | XLOC_017470 |
| TCONS_00034720 | mRNA | upstream | 27304 | 34596205 ~ 34644082 (+) | False | XLOC_017470 |
| TCONS_00034725 | mRNA | upstream | 57793 | 34605044 ~ 34613593 (+) | True | XLOC_017470 |
| TCONS_00034722 | mRNA | upstream | 62779 | 34604220 ~ 34608607 (+) | False | XLOC_017470 |
| TCONS_00034723 | mRNA | upstream | 63432 | 34604228 ~ 34607954 (+) | False | XLOC_017470 |
| TCONS_00034730 | mRNA | downstream | 16749 | 34717403 ~ 34734022 (+) | True | XLOC_017474 |
| TCONS_00034731 | mRNA | downstream | 69543 | 34770197 ~ 34783743 (+) | True | XLOC_017477 |
| TCONS_00034732 | mRNA | downstream | 91512 | 34792166 ~ 34794465 (+) | True | XLOC_017478 |
| TCONS_00034733 | mRNA | downstream | 145018 | 34845672 ~ 34865031 (+) | False | XLOC_017479 |
| TCONS_00034734 | mRNA | downstream | 145343 | 34845997 ~ 34864519 (+) | True | XLOC_017479 |
| TCONS_00034653 | other | upstream | 2200932 | 32466886 ~ 32470454 (+) | True | XLOC_017433 |
| TCONS_00034652 | other | upstream | 2238919 | 32408887 ~ 32432467 (+) | True | XLOC_017432 |
| TCONS_00034641 | other | upstream | 2947889 | 31722252 ~ 31723497 (+) | True | XLOC_017426 |
| TCONS_00034640 | other | upstream | 3284215 | 31387055 ~ 31387171 (+) | True | XLOC_017425 |
| TCONS_00034636 | other | upstream | 3448359 | 31217539 ~ 31223027 (+) | True | XLOC_017422 |
| TCONS_00034740 | other | downstream | 242717 | 34943371 ~ 34955260 (+) | True | XLOC_017481 |
| TCONS_00034743 | other | downstream | 362152 | 35062806 ~ 35063981 (+) | True | XLOC_017485 |
| TCONS_00034756 | other | downstream | 579342 | 35279996 ~ 35288971 (+) | False | XLOC_017488 |
| TCONS_00034760 | other | downstream | 681784 | 35382438 ~ 35382617 (+) | False | XLOC_017489 |
| TCONS_00034762 | other | downstream | 722044 | 35422698 ~ 35422827 (+) | True | XLOC_017490 |
