Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034660 |
| length | 601 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 2 |
| gene id | XLOC_017436 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 32501748 ~ 32521973 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | biological_process |
| GO:0006620 | posttranslational protein targeting to endoplasmic reticulum membrane | biological_process |
| GO:0030968 | endoplasmic reticulum unfolded protein response | biological_process |
| GO:0042552 | myelination | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0031204 | posttranslational protein targeting to membrane, translocation | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0031207 | Sec62/Sec63 complex | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| GO:0008320 | protein transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| ko03060 | Protein export |
| ko04141 | Protein processing in endoplasmic reticulum |
| ko03110 | Chaperones and folding catalysts |
| ko02044 | Secretion system |
| id | description |
|---|---|
| ZDB-GENE-040718-328 | Predicted to enable RNA binding activity and protein transmembrane transporter activity. Acts upstream of or within endoplasmic reticulum unfolded protein response; liver development; and myelination. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Sec62/Sec63 complex. Used to study fatty liver disease and polycystic liver disease. Human ortholog(s) of this gene implicated in polycystic liver disease. Orthologous to human SEC63 (SEC63 homolog, protein translocation regulator). |
| ensembl_id | ENSDART00000145481 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00034649 | lncRNA | upstream | 99403 | 32270907 ~ 32402360 (+) | True | XLOC_017431 |
| TCONS_00034648 | lncRNA | upstream | 260794 | 32231609 ~ 32240969 (+) | True | XLOC_017430 |
| TCONS_00036395 | lncRNA | upstream | 1519193 | 30977338 ~ 30982570 (+) | False | XLOC_017420 |
| TCONS_00036396 | lncRNA | upstream | 1519193 | 30977348 ~ 30982570 (+) | False | XLOC_017420 |
| TCONS_00036397 | lncRNA | upstream | 1519193 | 30977505 ~ 30982570 (+) | True | XLOC_017420 |
| TCONS_00034661 | lncRNA | downstream | 11972 | 32518209 ~ 32520467 (+) | True | XLOC_017436 |
| TCONS_00036613 | lncRNA | downstream | 321183 | 32827420 ~ 32850103 (+) | True | XLOC_017440 |
| TCONS_00036614 | lncRNA | downstream | 551547 | 33057784 ~ 33058544 (+) | True | XLOC_017441 |
| TCONS_00036615 | lncRNA | downstream | 1013548 | 33519785 ~ 33530031 (+) | True | XLOC_017444 |
| TCONS_00034681 | lncRNA | downstream | 1238113 | 33744350 ~ 33745251 (+) | False | XLOC_017451 |
| TCONS_00034657 | mRNA | upstream | 2471 | 32497260 ~ 32499292 (+) | False | XLOC_017435 |
| TCONS_00034658 | mRNA | upstream | 3018 | 32497326 ~ 32498745 (+) | True | XLOC_017435 |
| TCONS_00034655 | mRNA | upstream | 10727 | 32478151 ~ 32491036 (+) | False | XLOC_017434 |
| TCONS_00034656 | mRNA | upstream | 14138 | 32481348 ~ 32487625 (+) | True | XLOC_017434 |
| TCONS_00034654 | mRNA | upstream | 17007 | 32473584 ~ 32484756 (+) | False | XLOC_017434 |
| TCONS_00034662 | mRNA | downstream | 17339 | 32523576 ~ 32576703 (+) | False | XLOC_017437 |
| TCONS_00034663 | mRNA | downstream | 46675 | 32552912 ~ 32576703 (+) | True | XLOC_017437 |
| TCONS_00034664 | mRNA | downstream | 163238 | 32669475 ~ 32673227 (+) | False | XLOC_017438 |
| TCONS_00034665 | mRNA | downstream | 163238 | 32669475 ~ 32673235 (+) | True | XLOC_017438 |
| TCONS_00034666 | mRNA | downstream | 250526 | 32756763 ~ 32758949 (+) | True | XLOC_017439 |
| TCONS_00034653 | other | upstream | 31309 | 32466886 ~ 32470454 (+) | True | XLOC_017433 |
| TCONS_00034652 | other | upstream | 69296 | 32408887 ~ 32432467 (+) | True | XLOC_017432 |
| TCONS_00034641 | other | upstream | 778266 | 31722252 ~ 31723497 (+) | True | XLOC_017426 |
| TCONS_00034640 | other | upstream | 1114592 | 31387055 ~ 31387171 (+) | True | XLOC_017425 |
| TCONS_00034636 | other | upstream | 1278736 | 31217539 ~ 31223027 (+) | True | XLOC_017422 |
| TCONS_00034740 | other | downstream | 2437134 | 34943371 ~ 34955260 (+) | True | XLOC_017481 |
| TCONS_00034743 | other | downstream | 2556569 | 35062806 ~ 35063981 (+) | True | XLOC_017485 |
| TCONS_00034756 | other | downstream | 2773759 | 35279996 ~ 35288971 (+) | False | XLOC_017488 |
| TCONS_00034760 | other | downstream | 2876201 | 35382438 ~ 35382617 (+) | False | XLOC_017489 |
| TCONS_00034762 | other | downstream | 2916461 | 35422698 ~ 35422827 (+) | True | XLOC_017490 |
