XLOC_017451 (henmt1)


Basic Information

Item Value
gene id XLOC_017451
gene name henmt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33744065 ~ 33749174 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034680
GGCTAAAAATTGTTAGCATTTGCAACGGCCCTCGATCGGTCAAACCTGCCTGAGCAGAAGCGTCTTCTCTAGCATGTGTTTAACGAGCACCAGCAGACCTGACCAACACTCTCAGCATGACCGCCACACCGTTCTCTCCACCGCTGTACATGCAGCGATACCAGTTTGTTATCGATTATGTGAAAACCTACCGACCTAGAAAGGTCATCGATTTCGGATGCGCCGAATGTTGCTTACTGAAAAAGCTCAAGTTTCATCGCAACGGCATACAGTTGTTAGTGGGAGTTGATATAAACAGTGTCGTCCTCCTGAAAAGAATGCATTCATTAGCACCACTGGTGAGTGATTACCTTCAGCCAAGCGATGGCCCTTTAACCATCGAGTTGTACCAAGGGTCTGTAATGGAGAGAGAGCCGTGCACCAAAGGAtttgatcttgtgacatgtgttGAGCTGATCGAACATCTGGAGCTGGAGGAGGTGGAGAGGTTTTCAGAGGTGGTGTTCGGCTACATGGCGCCCGGTGCTGTGATTGTCACCACACCAAATGCAGAGTTCAACCCGCTGCTGCCGGGCCTGAGAGGCTTCAGAAACTATGATCATAAGTTTGAATGGACCAGAGCAGAGTTTCAGACCTGgGCTCATAGAGTTTGTAGAGAACATGGCTACTCCGTTCAATTCACTGGAGTCGGAGAAGCAGCTGGCCACTGGAGAGATGTGGGATTTTGCACCCAGATTGCAGTGTTCCAGAGAAATTTTGATGGAGTAAATCGGTCCATGAGTAATGCCGAACACTTGGAACCTTCAGTGTACAGActgCTATACAGGGTGGTGTATCCGAGCCTGTGCGATAACAACATCTACCAGAAGACTTTGATTAATGAGGTCCTGTATGAGGCTCAACATCTGAGGCAGCAATGGCTCATAAGAGAGAACATGAACAACAATGCACATTTCTACTCTCCTCCATTAATGGAAGCATTGCATCATGGGGCCGAAGGGAATGCATGTGAGCAGCAGCCTGTCTACCAGCAGGGTGGCATCATCTGCGTCCCGTTAGCCCGTGTGTGGTCCTGTCCCAGGGTCCAAGCTCTGTGCGGGAGCCTGCAGCGTCTCAGAGAGAAACTGCTGGAGGATGAGCGGGTGAGGATGAGCGCTGATGGAAGTGCGCTTAATCTGCCAgctgatgatgacgatgataatgtggaagaggaggaggaagaagaagaggaggagaaccAGCAGAATGTCAAAGCAGTATCGGGTGCAGTAAACAACATGGAGGAGGACTGGGATAGAGAGCTTGGTAGCTATGGAGACGAATAACAAATCGGGAAAGCTCTgtaagcaaaataaaagaaatgtgtgATTGACTGAGATGTTGTTGAAAAGATAAAAATCATTAAACATATCATTAAAAAGGCAA
>TCONS_00034681
CCTTGTCTTGGCCGTTTCTTCCGTCTTCAGGTCATCGATTTCGGATGCGCCGAATGTTGCTTACTGAAAAAGCTCAAGTTTCATCGCAACGGCATACAGTTGTTAGTGGGAGTTGATATAAACAGTGTCGTCCTCCTGAAAAGAATGCATTCATTAGCACCACTGGTGAGTGATTACCTTCAGCCAAGCGATGGCCCTTTAACCATCGAGTTGTACCAAGGGTCTGTAATGGAGAGAGAGCCGTGCACCAAAGGAtttgatcttgtgacatgt
>TCONS_00034682
GGGCCTGAGAGGCTTCAGAAACTATGATCATAAGTTTGAATGGACCAGAGCAGAGTTTCAGACCTGgGCTCATAGAGTTTGTAGAGAACATGGCTACTCCGTTCAATTCACTGGAGTCGGAGAAGCAGCTGGCCACTGGAGAGATGTGGGATTTTGCACCCAGATTGCAGTGTTCCAGAGAAATTTTGATGGAGTAAATCGGTCCATGAGTAATGCCGAACACTTGGAACCTTCAGTGTACAGActggtgaggaaaaaaaaaaactttcatat

Function

symbol description
henmt1 Enables O-methyltransferase activity and RNA methyltransferase activity. Involved in RNA methylation. Acts upstream of or within oocyte development and piRNA metabolic process. Located in P granule. Is expressed in ovary; primordial germ cell; and testis. Orthologous to human HENMT1 (HEN methyltransferase 1).

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0030422 production of siRNA involved in RNA interference biological_process
GO:0030154 cell differentiation biological_process
GO:0001510 RNA methylation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0048599 oocyte development biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008171 O-methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050417-387 Enables O-methyltransferase activity and RNA methyltransferase activity. Involved in RNA methylation. Acts upstream of or within oocyte development and piRNA metabolic process. Located in P granule. Is expressed in ovary; primordial germ cell; and testis. Orthologous to human HENMT1 (HEN methyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000018871

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034680 False 1425 mRNA 0.48 6 33744065 33749174
TCONS_00034681 False 273 lncRNA 0.47 2 33744350 33745251
TCONS_00034682 True 273 lncRNA 0.45 2 33745467 33745894

Neighbor

gene id symbol gene type direction distance location
XLOC_017450 ppil6 coding upstream 770 33739059 ~ 33743295 (+)
XLOC_017449 ak9 coding upstream 6234 33708318 ~ 33737831 (+)
XLOC_017448 si:ch211-199m3.1 coding upstream 63619 33679500 ~ 33680446 (+)
XLOC_017447 si:dkey-65b13.8 coding upstream 132325 33610271 ~ 33611740 (+)
XLOC_017446 si:dkey-65b13.8 coding upstream 145073 33560419 ~ 33598992 (+)
XLOC_017452 olfml2ba coding downstream 42982 33792156 ~ 33806508 (+)
XLOC_017453 rxrgb coding downstream 126082 33875256 ~ 33920055 (+)
XLOC_017454 lmx1a coding downstream 173165 33922339 ~ 33940260 (+)
XLOC_017455 BX296562.2 coding downstream 210396 33959570 ~ 33975292 (+)
XLOC_017456 si:dkey-51e6.1 coding downstream 232772 33981946 ~ 33985743 (+)
XLOC_017441 NA non-coding upstream 685521 33057784 ~ 33058544 (+)
XLOC_017440 NA non-coding upstream 893962 32827420 ~ 32850103 (+)
XLOC_017433 CU138515.1 non-coding upstream 1273611 32466886 ~ 32470454 (+)
XLOC_017431 BX927123.1 non-coding upstream 1341705 32270907 ~ 32402360 (+)
XLOC_017430 BX842669.1 non-coding upstream 1503096 32231609 ~ 32240969 (+)
XLOC_017471 BX279523.2 non-coding downstream 912381 34661555 ~ 34663198 (+)
XLOC_017472 BX279523.3 non-coding downstream 914148 34663322 ~ 34664762 (+)
XLOC_017475 NA non-coding downstream 1012569 34761743 ~ 34766443 (+)
XLOC_017476 NA non-coding downstream 1015276 34764450 ~ 34765817 (+)

Expression


Co-expression Network