RNA id: TCONS_00036614



Basic Information


Item Value
RNA id TCONS_00036614
length 761
lncRNA type intronic
GC content 0.43
exon number 1
gene id XLOC_017441
representative True

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33057784 ~ 33058544 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TATCTGCAGTGCACATTGCACCTATAACTATAAACCAGTTAACTTCCAACACCACACAAATGAAATATCCGCCTCTGCTCAGTCTGCAAGCCAATGAGCCATTCCTAATGCACACCCACAGAAGAGAAGCGGAGTTTAGAGCTACTCGCCGAGGTCTGCGCAAGTTCATTAGCTGTTTAGCTATTGAAGAGATTTCAAAGCAACTCTGCTGCACTCCGTCAAATGGACCCAGACGCAGAGGGCGAATGGAGAGAATGCCAATTCCTTAAAACTACATCCAACTTCTTTCATTTTCCTCTCAGAACTTTCAATTTACTGCTCATCTGGGATCGTCTTTCCGTAGCCTGGAGAAAAATACTTTGCTGGAGCCCGTACTGACAGGAACTGGGTAAGAGCAATTGGAAACGAGTACAGGTTGAAGGATAATTctcttttgttgattttttttttcggttGTTGTTTTTAGACGAGCGGTGCAGCATTGAGGATGAACTCCTGATGGCAAGTTCAGCTCTGCTTGATTGTGATGAAGAAATCGATAAAGATGGGAATGCAGGCTCGTTAGAGAATGCTGCTAAATTACAGAGCATACAGACAAAGCCCGCTGTTGACATCGGAATAATGTTCAGTTTGAGTCTCTCACACATTCGGATGCACGGACATACGCTAACACAAAGGAAAACCAGGCTGTGCTACAATAGACGACAACGAAAGGATAGATAACATTGGTGCTGTGAGGAAAAAAGGAAAGGGTAAAAAAA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00036613 lncRNA upstream 207681 32827420 ~ 32850103 (+) True XLOC_017440
TCONS_00034661 lncRNA upstream 537317 32518209 ~ 32520467 (+) True XLOC_017436
TCONS_00034660 lncRNA upstream 551547 32501763 ~ 32506237 (+) False XLOC_017436
TCONS_00034649 lncRNA upstream 655424 32270907 ~ 32402360 (+) True XLOC_017431
TCONS_00034648 lncRNA upstream 816815 32231609 ~ 32240969 (+) True XLOC_017430
TCONS_00036615 lncRNA downstream 461241 33519785 ~ 33530031 (+) True XLOC_017444
TCONS_00034681 lncRNA downstream 685806 33744350 ~ 33745251 (+) False XLOC_017451
TCONS_00034682 lncRNA downstream 686923 33745467 ~ 33745894 (+) True XLOC_017451
TCONS_00034689 lncRNA downstream 901026 33959570 ~ 33975292 (+) True XLOC_017455
TCONS_00036616 lncRNA downstream 971292 34029836 ~ 34033197 (+) True XLOC_017460
TCONS_00034666 mRNA upstream 298835 32756763 ~ 32758949 (+) True XLOC_017439
TCONS_00034665 mRNA upstream 384549 32669475 ~ 32673235 (+) True XLOC_017438
TCONS_00034664 mRNA upstream 384557 32669475 ~ 32673227 (+) False XLOC_017438
TCONS_00034662 mRNA upstream 481081 32523576 ~ 32576703 (+) False XLOC_017437
TCONS_00034667 mRNA downstream 116646 33175190 ~ 33189652 (+) False XLOC_017442
TCONS_00034668 mRNA downstream 116799 33175343 ~ 33189652 (+) True XLOC_017442
TCONS_00034669 mRNA downstream 235884 33294428 ~ 33299384 (+) True XLOC_017443
TCONS_00034670 mRNA downstream 460891 33519435 ~ 33530425 (+) False XLOC_017444
TCONS_00034671 mRNA downstream 473752 33532296 ~ 33537243 (+) False XLOC_017445
TCONS_00034653 other upstream 587330 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 625317 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 1334287 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 1670613 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 1834757 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034740 other downstream 1884827 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 2004262 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 2221452 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 2323894 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 2364154 35422698 ~ 35422827 (+) True XLOC_017490

Expression Profile


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