XLOC_017445 (kcnf1a)


Basic Information

Item Value
gene id XLOC_017445
gene name kcnf1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33532296 ~ 33537243 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034671
GTTTATTCTTCTCTCAATCGGACATCATGCAACTGAAGCTTTTTAGACTTTCTGTACAGTTTGACCCAAATATAAGCAGGTTTTATCTCAGCTAAAATGGTACTTTGCTTCAATAATAATCTTTAGCGCTATTTTTATTAACGCAACAACAAGACGTTGCGATTTAAATTAAGTAAgataaattaacataaatatgGAATCATTAAGGGAAGCATACATTTTGCACGCTTTCGGATTTATTCTGCTCTCAACACGGACATCCTGCAGCTGAAGTCAAGAAGTCCGAGACTTTCTTTACAGTTCTCTAAATACAACTATCAGATGACATGTGGGAGTTCCCGAGGACTCGTTACGCGGATTGTAACGGCTCAGAAGCGAGCGAGGAGACGGAGATTTCTGTGAATATCGGAGGTGTCAAGCACACTCTCTACGGGGACGTGCTGAACCGATATCCCGAGACGCGTTTGGCGGAGCTGCTGAACCGAGTCTCTGATTCCGCAGAAGATCTCTCCGGGCTCTGCGATGACTACGACGACTTAAAACGGGAGTTTTACTTCGACAGAGACCCAAAGGCATTTAAATGCATCCTAGAGCTGTACTACTACGGAGAGATTCACATGAAACGAGGAATCTGTCCCATGTGCTTCATGAAAGAGATGGACTACTGGGGAATCGACGAGGACTATCTGGATGAATGCTGCAGATGTAGTTTAAATGAGGTGGAAACCGAGCTGGCGGAAATAGCAGAGAAAGTCAAGACCATCCTGGATGACctggaggatgatgatgatgatgatgatgcgaGGGTCAGCAGAAGCCAGAGGTGCCAGACCTTCCTGTGGAAGCTCATGGAGAAACCGGAGTCCTCTGTCGCAGCGCGCGTGATCGCGGTGGTGTCGTTCGTGTTCATCCTGCTGTCCTCTGTGGTCATGTGCGTTGGCACCATTCCGGAGCTGCAGGTGCAAGATGATGAGGGTCACCTCACGGAGCACCCGACCCTCGAGGCCATCGAGACGGCCTGCATCATCTGGTTCACAGTGGAATACGTTTTGCGCCTCGCGTCCTCTTCAAGCAAATTGCACTTTGTGTTTTCCTTCCTGAACATAATCGACTTCCTCGCCATCATGCCTTTTTATGTAGTGCTGATTCTTACGCATTTGGGCACTGCTATGATGGAGCTCGCCAATGTGCAACAGGCGGTGCAGGCTCTGCGCATCATGCGTATCGCGCGCATCTTCAAACTCGCGCGCCACTCGTCAGGTCTACAAACGTTAACGTTCGCGCTCAAAAGCAGCCTGAAAGAGCTGGGTCTGCTGCTCATGTATATGAGTGTGGGGATTTTTCTGTTCTCCGCGCTGGGTTACACGATGGAGCAGAGCCACCCAGAGACCATGTTCACCAGCATCCCGCAGTCCTTCTGGTGGGCCATTATTACTATGACTACTGTGGGATATGGAGACATCTATCCTAAAACCACGCTGGGCAGATGTAACGCAGCGGTCAGTTTCTTGTGTGGCGTGATAGCCATCGCGTTGCCGATCCACCCGATTATCAACAACTTCGTCATCGTGTACAGTAAACAGCGCGTGCTCGAGACCGCAGCCAAGCACGAGATTGAGCTCATGGCGTTACGCGCGAGGGAGGAGGCGCAGGAGTGTCCGGAGGCTGAGAGAAGAGCGGCTTCAGTTGACAGCAGCTCGATGTGGGACAGTGCAGCTGTGAGCGCCTCTCAGAGTGACTCCTTCATCCCTTTACTCGGTGAGACAGCCACGGTGTCCAAAAACCAACGTGCCCAAAAATGCAACAACTAGAGGGATTTACTTATAATTACGAACAGTTTACTTTGATGCTTAGAAACCGAAATCAATAATAGGTCTATGTAAACGCGTgcttgtccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctttagtTGACCTCAGCTCAACAACCAATCTACTATTTTGAAGCATAACTCAGCTAAAAATGTAATTAgctgttaaaggaatagtttatccaaaaatttaaatctgtgatcatttactcacccttcacctTTACCAAACCAGTTTGATGATTTGTtatctgttgaatacaaaagaagttatttttaagaatgttggaaatctgtaaccattcacttaGTTAGTCACATAGTTTTACAATGTGTGTGAATAGTTTCAAACATTccttaaaatgtcttcttttttttttttttgcttaacggaacaaaaaatgtgaacaaatgaagagtaaatgatgacagatttttcattgtTTGATGAACTATTCCTTTCGTTTACTCCCCCTCAGGCTTTCCAAGATTtgggtgtttttttcttttgcatttaaCGGACATCAAAGAAGGTTTTTAGCAGAAGCTGTGGTCCTTAATGGTTTGGAAAATGGTAATAGATGACTCTGAGAGTCAAACAAATAACAAGCAAAACAGTTTTCAAACTTGTGGCTCCCGTGAAGGGATAATGTTTAGCCTCTGCAGGAACCCTACATTTTGAAAGGCATGAGGGGgtgtaaattaacagcaaatttacAATTTGGATGAATTAtctgaaataaaaacacaatttcaaTATGAACAAAATATCTCCGTTTGAGGTTTGTAGTCTAAAAAGAATGCTTAGTATAAGATGCACTACTTATATAGACTGTTTTcccatttaaaaataatgatttaaaatcagttaaagggtccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaaggaacaataaacaattaaaacatttcagAAGAAAGAGTACAAATAACCATATAACATgcataactgaaaataaaattacttgtaaaataaaatctatccACTTATCCACATTTAAGACCTCAAGACTCATGGTCTCTGAAGACGTCTTGCAGTAATGAGCATGTCAGACTAATCTCTTACAAGAATGAGCCTGAAGGAAGAAAAATGACTATTACTTTGTAATGCAATTAACGTACTGTGAAGCATACAAAAACATAACCTAATACATTTGTCTAACAccacaaacatatttttgaatgATTGTCTCTGTTTTACTTTTCTTTCTACTTAAAAATCCTCCTCCTCAGGTTCTGCTGGACAGCATTAAAAAACCCCAACTGGAACTATAATTTAGCCTGAGCAACAGCAATAGTTTAGAACTAGACaataattcatgtttttactCAATCACAATACCAGTCATGGGTATATTTGTAGGAATAGTCTATAGatcaaatttgatttttttttcg
>TCONS_00034672
TGTGAAACTCTGAATTGCAGCTATCAGATGACATGTGGGAGTTCCCGAGGACTCGTTACGCGGATTGTAACGGCTCAGAAGCGAGCGAGGAGACGGAGATTTCTGTGAATATCGGAGGTGTCAAGCACACTCTCTACGGGGACGTGCTGAACCGATATCCCGAGACGCGTTTGGCGGAGCTGCTGAACCGAGTCTCTGATTCCGCAGAAGATCTCTCCGGGCTCTGCGATGACTACGACGACTTAAAACGGGAGTTTTACTTCGACAGAGACCCAAAGGCATTTAAATGCATCCTAGAGCTGTACTACTACGGAGAGATTCACATGAAACGAGGAATCTGTCCCATGTGCTTCATGAAAGAGATGGACTACTGGGGAATCGACGAGGACTATCTGGATGAATGCTGCAGATGTAGTTTAAATGAGGTGGAAACCGAGCTGGCGGAAATAGCAGAGAAAGTCAAGACCATCCTGGATGACctggaggatgatgatgatgatgatgatgcgaGGGTCAGCAGAAGCCAGAGGTGCCAGACCTTCCTGTGGAAGCTCATGGAGAAACCGGAGTCCTCTGTCGCAGCGCGCGTGATCGCGGTGGTGTCGTTCGTGTTCATCCTGCTGTCCTCTGTGGTCATGTGCGTTGGCACCATTCCGGAGCTGCAGGTGCAAGATGATGAGGGTCACCTCACGGAGCACCCGACCCTCGAGGCCATCGAGACGGCCTGCATCATCTGGTTCACAGTGGAATACGTTTTGCGCCTCGCGTCCTCTTCAAGCAAATTGCACTTTGTGTTTTCCTTCCTGAACATAATCGACTTCCTCGCCATCATGCCTTTTTATGTAGTGCTGATTCTTACGCATTTGGGCACTGCTATGATGGAGCTCGCCAATGTGCAACAGGCGGTGCAGGCTCTGCGCATCATGCGTATCGCGCGCATCTTCAAACTCGCGCGCCACTCGTCAGGTCTACAAACGTTAACGTTCGCGCTCAAAAGCAGCCTGAAAGAGCTGGGTCTGCTGCTCATGTATATGAGTGTGGGGATTTTTCTGTTCTCCGCGCTGGGTTACACGATGGAGCAGAGCCACCCAGAGACCATGTTCACCAGCATCCCGCAGTCCTTCTGGTGGGCCATTATTACTATGACTACTGTGGGATATGGAGACATCTATCCTAAAACCACGCTGGGCAGATGTAACGCAGCGGTCAGTTTCTTGTGTGGCGTGATAGCCATCGCGTTGCCGATCCACCCGATTATCAACAACTTCGTCATCGTGTACAGTAAACAGCGCGTGCTCGAGACCGCAGCCAAGCACGAGATTGAGCTCATGGCGTTACGCGCGAGGGAGGAGGCGCAGGAGTGTCCGGAGGCTGAGAGAAGAGCGGCTTCAGTTGACAGCAGCTCGATGTGGGACAGTGCAGCTGTGAGCGCCTCTCAGAGTGACTCCTTCATCCCTTTACTCGGTGAGACAGCCACGGTGTCCAAAAACCAACGTGCCCAAAAATGCAACAACTAGAGGGATTTACTTATAATTACGAACAGTTTACTTTGATGCTTAGAAACCGAAATCAATAATAGGTCTATGTAAACGCGTgcttgtccatccatccat

Function

symbol description
kcnf1a Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in musculature system; nervous system; and pectoral fin. Orthologous to human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-217 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in musculature system; nervous system; and pectoral fin. Orthologous to human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1).

Ensembl:

ensembl_id ENSDARG00000027940

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034671 False 3500 mRNA 0.41 2 33532296 33537243
TCONS_00034672 True 1613 mRNA 0.52 1 33534038 33535650

Neighbor

gene id symbol gene type direction distance location
XLOC_017444 drc1 coding upstream 1871 33519435 ~ 33530425 (+)
XLOC_017443 mycn coding upstream 232912 33294428 ~ 33299384 (+)
XLOC_017442 ddx1 coding upstream 342644 33175190 ~ 33189652 (+)
XLOC_017441 NA coding upstream 473752 33057784 ~ 33058544 (+)
XLOC_017440 NA coding upstream 682193 32827420 ~ 32850103 (+)
XLOC_017446 si:dkey-65b13.8 coding downstream 23176 33560419 ~ 33598992 (+)
XLOC_017447 si:dkey-65b13.8 coding downstream 73028 33610271 ~ 33611740 (+)
XLOC_017448 si:ch211-199m3.1 coding downstream 142257 33679500 ~ 33680446 (+)
XLOC_017449 ak9 coding downstream 171075 33708318 ~ 33737831 (+)
XLOC_017450 ppil6 coding downstream 201816 33739059 ~ 33743295 (+)
XLOC_017433 CU138515.1 non-coding upstream 1061842 32466886 ~ 32470454 (+)
XLOC_017431 BX927123.1 non-coding upstream 1129936 32270907 ~ 32402360 (+)
XLOC_017430 BX842669.1 non-coding upstream 1291327 32231609 ~ 32240969 (+)
XLOC_017455 BX296562.2 non-coding downstream 422327 33959570 ~ 33975292 (+)
XLOC_017471 BX279523.2 non-coding downstream 1124312 34661555 ~ 34663198 (+)
XLOC_017472 BX279523.3 non-coding downstream 1126079 34663322 ~ 34664762 (+)
XLOC_017475 NA non-coding downstream 1224500 34761743 ~ 34766443 (+)
XLOC_017476 NA non-coding downstream 1227207 34764450 ~ 34765817 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_09309682_09311163 KCNF1A coding CI01000325 null 9309682 ~ 9311163 (+)