XLOC_017443 (mycn)


Basic Information

Item Value
gene id XLOC_017443
gene name mycn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33294428 ~ 33299384 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034669
TAGAATAATACTTCACAGCCCGAAACACAGAGGCGCAGAACAGTCTTCAGTCGCCGCGGTAGATGTGCGACTCCAAACGGGAGGCACAGTGACTGCGATAAAGAAGGGACaagaaaaacaggaaaaaacaagaGGGAGAATGCCAGCTAAAACCATGAGCTCAGATCTGGAGTTTGACTCCTTGCAGCCGTGTTTCTACCCGGACGAGGATGACTTCTACTTCTGCAGACCAGACGCCGCACCGCCTGGTGAGGACATCTGGAAGAAATTCGAGCTGCTGCCCACTCCTCCTCTGTCCCCGAGCCGGGCAGCGCTTCCAGGGGACCCGGGGGAGCTGGGCGCGGTGGCTGGGGATTGCTCGCTGATGGGCTTTGGATTAACCGACCCGTTGGACTGGGCTTCCGAGCTTCTGCTTTTACCGGGAGACGACATTTGGGGGGCGTCGGACGGGGACCTCTTTGGCTCCGTTTTGGATACTACGGACAATTCCATCATCATTCAGGACTGCATGTGGAGCGGCTTCTCGGCGCGAGAGAAACTGGAGCGGGTTGTGAATGAGAAACTCGGCAAAGTCGTTCCTACTCCAACCTGTACTGAAGCCGGTAAAGACACGACAGTCAAAGCGCCCGAAGTGAGCCACTCTATACCGGAGTGTGTGGACCCTACCGTGGTTTTCCCTTATCCAGTCAACAAAAGAAACGGGAGCAGCAGCAGCCAAAGTGTGACACAACTGAGGAGCCAACAATTGCCTCAAGTCAGTGCAGGCGAGACTCCGAGCGACTCTGatgatgatgatgaggatgacgaagatgaggatgatgaggaagaagatgatgaagaagaggaagacgatgaagaagaggaagagattGATGTCGTAACGGTGGAGAAGAGGCGTTCCATCACCAGCAGGACAACCAGCACTGGACTGTCTGCTGTCTCCAACTCTCAGGCAGGAGGGCGACTGGGCTCAGGGGTGAGCAAAGCTCCGCAGGAACTCATTTTAAAGAGGACAGCAGCAGCCTCCATCCACCAGCAGCAACATAACTACGCAGCCCCATCCCCTTACTCCGAACAGCAAGACGTTCCCAGCGCTCCTCCAAGCAAGAAACTCAGAATCGACAGCAGCACTATAACTCTACGCACTGGCAGGAACCAGAGCTCTTCTCCAAACTCCCCTACCAACAGCGTACCAAGTCAGCGCTTGAGGAAGAGCGACTCCAGCAGCCCCAGATGCTCCGACTCGGAGGACAGCGAACGCAGACGCAACCACAACATCTTGGAGCGCCAGCGGCGCAATGACCTGCGGTCTAGCTTCCTCACTCTGCGGGATCAGGTGCCTGAGCTCGCACACAACGACAAGGCAGCAAAGGTGGTCATCCTAAAGAAGGCCACTGATTACGTCAGCTCCCTGGAGGCTCAGGAGTTCCGACTCCAGCAGGAGAAAGACAGATTGCAAGCCAAACGACAACAGCTCCTCCGCAGACTTGAGCAGGCCAGGACTCGCTAACCCTTTACGCTCATTGGCTGAATGGCTCACAGCTAATTGTCGACATCAAATGACGAATGGCGAATGGCTACGGCTAACAGCCGAAAAAAGATTCTAGGGACACTCACTGCTGAcacttttttgcacattttttgacGTCAAGAATGTTTCAGGTTTACTTTGTCACCCCAATCACGCAACAACGATGAGGGAAGGTGCTTACCTGTAAAAGCAACTTCCCCTCAATGAACACAGCTAGTCTTCAGTACGCGATTGGGTCGACGAACTTTGTTCACGCTCTTCCTGCAAAATAGACACTAAACAAATGACACGAGACACTTCGAATGGCTATAATCTCACACCTCACTGGTGCTGAATCTCATGGATGTACCTCTGCGCACCTTGATGTCAGACACTTTTGTAAATAGATTTAGATTTTAAGAGAACGTACACTCAAGTCTGCCTTGTTTTTGTATACAATTATTGTCTTTTGGTTTTTATAAAGATGTCAAAAGCTGCCAATAACTAGACTGGAAGTTTATATACCTTTAACAAGTACTGTAAGGCCTCGATTTTAGAGGATTTTTGTAAAATAAGgacacattgttttgtttttggattCCTTTGTCTTATAATCTCTCTGTTTTGACATGCTTTACTAATTCCTACATTTATGCTTTAGTGTGCTTCTGATACATACTAAATTTGATACTTATATTTTCGTATGAAAATGAGTTCTGAGTAGATATCACTTTATCTTCTTTTTATCCTTTTTTCTACCTTCTTTTGTACAGAAAATTCTTTCTATCTCCATTTATAAGGCTTCTATTCTTTGttctttgtttatatatttgtaagtATTGGGTTCATAGAACTGGGTcaatgggaaaaaaaagtttttttttttctgcttttctaTAATGTACATTTTAGTGCTGCGACTCACAGCACTTTGAAATACctcattttgaaaaataaatagaaaatttgaaaacaaaa

Function

symbol description
mycn Predicted to enable DNA binding activity; DNA-binding transcription factor activity; and protein dimerization activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including immature eye; nervous system; pectoral fin bud; pharyngeal arch; and pronephric duct. Human ortholog(s) of this gene implicated in Feingold syndrome. Orthologous to human MYCN (MYCN proto-oncogene, bHLH transcription factor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-020711-1 Predicted to enable DNA binding activity; DNA-binding transcription factor activity; and protein dimerization activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including immature eye; nervous system; pectoral fin bud; pharyngeal arch; and pronephric duct. Human ortholog(s) of this gene implicated in Feingold syndrome. Orthologous to human MYCN (MYCN proto-oncogene, bHLH transcription factor).

Ensembl:

ensembl_id ENSDARG00000006837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034669 True 2488 mRNA 0.47 3 33294428 33299384

Neighbor

gene id symbol gene type direction distance location
XLOC_017442 ddx1 coding upstream 104776 33175190 ~ 33189652 (+)
XLOC_017441 NA coding upstream 235884 33057784 ~ 33058544 (+)
XLOC_017440 NA coding upstream 444325 32827420 ~ 32850103 (+)
XLOC_017439 lratd1 coding upstream 535479 32756763 ~ 32758949 (+)
XLOC_017438 si:dkeyp-13d11.1 coding upstream 621193 32669475 ~ 32673235 (+)
XLOC_017444 drc1 coding downstream 220051 33519435 ~ 33530425 (+)
XLOC_017445 kcnf1a coding downstream 232912 33532296 ~ 33537243 (+)
XLOC_017446 si:dkey-65b13.8 coding downstream 261035 33560419 ~ 33598992 (+)
XLOC_017447 si:dkey-65b13.8 coding downstream 310887 33610271 ~ 33611740 (+)
XLOC_017448 si:ch211-199m3.1 coding downstream 380116 33679500 ~ 33680446 (+)
XLOC_017433 CU138515.1 non-coding upstream 823974 32466886 ~ 32470454 (+)
XLOC_017431 BX927123.1 non-coding upstream 892068 32270907 ~ 32402360 (+)
XLOC_017430 BX842669.1 non-coding upstream 1053459 32231609 ~ 32240969 (+)
XLOC_017455 BX296562.2 non-coding downstream 660186 33959570 ~ 33975292 (+)
XLOC_017471 BX279523.2 non-coding downstream 1362171 34661555 ~ 34663198 (+)
XLOC_017472 BX279523.3 non-coding downstream 1363938 34663322 ~ 34664762 (+)
XLOC_017475 NA non-coding downstream 1462359 34761743 ~ 34766443 (+)
XLOC_017476 NA non-coding downstream 1465066 34764450 ~ 34765817 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_09164493_09168440 MYCN coding CI01000325 null 9164493 ~ 9169418 (+)