RNA id: TCONS_00034671


Basic Information

Item Value
RNA id TCONS_00034671
length 3500
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_017445
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33532296 ~ 33537243 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTATTCTTCTCTCAATCGGACATCATGCAACTGAAGCTTTTTAGACTTTCTGTACAGTTTGACCCAAATATAAGCAGGTTTTATCTCAGCTAAAATGGTACTTTGCTTCAATAATAATCTTTAGCGCTATTTTTATTAACGCAACAACAAGACGTTGCGATTTAAATTAAGTAAgataaattaacataaatatgGAATCATTAAGGGAAGCATACATTTTGCACGCTTTCGGATTTATTCTGCTCTCAACACGGACATCCTGCAGCTGAAGTCAAGAAGTCCGAGACTTTCTTTACAGTTCTCTAAATACAACTATCAGATGACATGTGGGAGTTCCCGAGGACTCGTTACGCGGATTGTAACGGCTCAGAAGCGAGCGAGGAGACGGAGATTTCTGTGAATATCGGAGGTGTCAAGCACACTCTCTACGGGGACGTGCTGAACCGATATCCCGAGACGCGTTTGGCGGAGCTGCTGAACCGAGTCTCTGATTCCGCAGAAGATCTCTCCGGGCTCTGCGATGACTACGACGACTTAAAACGGGAGTTTTACTTCGACAGAGACCCAAAGGCATTTAAATGCATCCTAGAGCTGTACTACTACGGAGAGATTCACATGAAACGAGGAATCTGTCCCATGTGCTTCATGAAAGAGATGGACTACTGGGGAATCGACGAGGACTATCTGGATGAATGCTGCAGATGTAGTTTAAATGAGGTGGAAACCGAGCTGGCGGAAATAGCAGAGAAAGTCAAGACCATCCTGGATGACctggaggatgatgatgatgatgatgatgcgaGGGTCAGCAGAAGCCAGAGGTGCCAGACCTTCCTGTGGAAGCTCATGGAGAAACCGGAGTCCTCTGTCGCAGCGCGCGTGATCGCGGTGGTGTCGTTCGTGTTCATCCTGCTGTCCTCTGTGGTCATGTGCGTTGGCACCATTCCGGAGCTGCAGGTGCAAGATGATGAGGGTCACCTCACGGAGCACCCGACCCTCGAGGCCATCGAGACGGCCTGCATCATCTGGTTCACAGTGGAATACGTTTTGCGCCTCGCGTCCTCTTCAAGCAAATTGCACTTTGTGTTTTCCTTCCTGAACATAATCGACTTCCTCGCCATCATGCCTTTTTATGTAGTGCTGATTCTTACGCATTTGGGCACTGCTATGATGGAGCTCGCCAATGTGCAACAGGCGGTGCAGGCTCTGCGCATCATGCGTATCGCGCGCATCTTCAAACTCGCGCGCCACTCGTCAGGTCTACAAACGTTAACGTTCGCGCTCAAAAGCAGCCTGAAAGAGCTGGGTCTGCTGCTCATGTATATGAGTGTGGGGATTTTTCTGTTCTCCGCGCTGGGTTACACGATGGAGCAGAGCCACCCAGAGACCATGTTCACCAGCATCCCGCAGTCCTTCTGGTGGGCCATTATTACTATGACTACTGTGGGATATGGAGACATCTATCCTAAAACCACGCTGGGCAGATGTAACGCAGCGGTCAGTTTCTTGTGTGGCGTGATAGCCATCGCGTTGCCGATCCACCCGATTATCAACAACTTCGTCATCGTGTACAGTAAACAGCGCGTGCTCGAGACCGCAGCCAAGCACGAGATTGAGCTCATGGCGTTACGCGCGAGGGAGGAGGCGCAGGAGTGTCCGGAGGCTGAGAGAAGAGCGGCTTCAGTTGACAGCAGCTCGATGTGGGACAGTGCAGCTGTGAGCGCCTCTCAGAGTGACTCCTTCATCCCTTTACTCGGTGAGACAGCCACGGTGTCCAAAAACCAACGTGCCCAAAAATGCAACAACTAGAGGGATTTACTTATAATTACGAACAGTTTACTTTGATGCTTAGAAACCGAAATCAATAATAGGTCTATGTAAACGCGTgcttgtccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctttagtTGACCTCAGCTCAACAACCAATCTACTATTTTGAAGCATAACTCAGCTAAAAATGTAATTAgctgttaaaggaatagtttatccaaaaatttaaatctgtgatcatttactcacccttcacctTTACCAAACCAGTTTGATGATTTGTtatctgttgaatacaaaagaagttatttttaagaatgttggaaatctgtaaccattcacttaGTTAGTCACATAGTTTTACAATGTGTGTGAATAGTTTCAAACATTccttaaaatgtcttcttttttttttttttgcttaacggaacaaaaaatgtgaacaaatgaagagtaaatgatgacagatttttcattgtTTGATGAACTATTCCTTTCGTTTACTCCCCCTCAGGCTTTCCAAGATTtgggtgtttttttcttttgcatttaaCGGACATCAAAGAAGGTTTTTAGCAGAAGCTGTGGTCCTTAATGGTTTGGAAAATGGTAATAGATGACTCTGAGAGTCAAACAAATAACAAGCAAAACAGTTTTCAAACTTGTGGCTCCCGTGAAGGGATAATGTTTAGCCTCTGCAGGAACCCTACATTTTGAAAGGCATGAGGGGgtgtaaattaacagcaaatttacAATTTGGATGAATTAtctgaaataaaaacacaatttcaaTATGAACAAAATATCTCCGTTTGAGGTTTGTAGTCTAAAAAGAATGCTTAGTATAAGATGCACTACTTATATAGACTGTTTTcccatttaaaaataatgatttaaaatcagttaaagggtccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaaggaacaataaacaattaaaacatttcagAAGAAAGAGTACAAATAACCATATAACATgcataactgaaaataaaattacttgtaaaataaaatctatccACTTATCCACATTTAAGACCTCAAGACTCATGGTCTCTGAAGACGTCTTGCAGTAATGAGCATGTCAGACTAATCTCTTACAAGAATGAGCCTGAAGGAAGAAAAATGACTATTACTTTGTAATGCAATTAACGTACTGTGAAGCATACAAAAACATAACCTAATACATTTGTCTAACAccacaaacatatttttgaatgATTGTCTCTGTTTTACTTTTCTTTCTACTTAAAAATCCTCCTCCTCAGGTTCTGCTGGACAGCATTAAAAAACCCCAACTGGAACTATAATTTAGCCTGAGCAACAGCAATAGTTTAGAACTAGACaataattcatgtttttactCAATCACAATACCAGTCATGGGTATATTTGTAGGAATAGTCTATAGatcaaatttgatttttttttcg

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-217 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in musculature system; nervous system; and pectoral fin. Orthologous to human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1).

Ensembl:

ensembl_id ENSDART00000153153

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036615 lncRNA upstream 2265 33519785 ~ 33530031 (+) True XLOC_017444
TCONS_00036614 lncRNA upstream 473752 33057784 ~ 33058544 (+) True XLOC_017441
TCONS_00036613 lncRNA upstream 682193 32827420 ~ 32850103 (+) True XLOC_017440
TCONS_00034661 lncRNA upstream 1011829 32518209 ~ 32520467 (+) True XLOC_017436
TCONS_00034660 lncRNA upstream 1026059 32501763 ~ 32506237 (+) False XLOC_017436
TCONS_00034681 lncRNA downstream 207107 33744350 ~ 33745251 (+) False XLOC_017451
TCONS_00034682 lncRNA downstream 208224 33745467 ~ 33745894 (+) True XLOC_017451
TCONS_00034689 lncRNA downstream 422327 33959570 ~ 33975292 (+) True XLOC_017455
TCONS_00036616 lncRNA downstream 492593 34029836 ~ 34033197 (+) True XLOC_017460
TCONS_00036617 lncRNA downstream 789635 34326878 ~ 34341183 (+) False XLOC_017463
TCONS_00034670 mRNA upstream 1871 33519435 ~ 33530425 (+) False XLOC_017444
TCONS_00034669 mRNA upstream 232912 33294428 ~ 33299384 (+) True XLOC_017443
TCONS_00034667 mRNA upstream 342644 33175190 ~ 33189652 (+) False XLOC_017442
TCONS_00034668 mRNA upstream 342644 33175343 ~ 33189652 (+) True XLOC_017442
TCONS_00034666 mRNA upstream 773347 32756763 ~ 32758949 (+) True XLOC_017439
TCONS_00034673 mRNA downstream 23176 33560419 ~ 33561879 (+) False XLOC_017446
TCONS_00034674 mRNA downstream 23176 33560419 ~ 33598992 (+) True XLOC_017446
TCONS_00034675 mRNA downstream 73028 33610271 ~ 33611740 (+) True XLOC_017447
TCONS_00034676 mRNA downstream 142257 33679500 ~ 33680446 (+) True XLOC_017448
TCONS_00034677 mRNA downstream 171075 33708318 ~ 33737831 (+) False XLOC_017449
TCONS_00034653 other upstream 1061842 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 1099829 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 1808799 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 2145125 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 2309269 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034740 other downstream 1406128 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 1525563 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 1742753 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 1845195 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 1885455 35422698 ~ 35422827 (+) True XLOC_017490

Expression Profile

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