XLOC_017437 (scml4)


Basic Information

Item Value
gene id XLOC_017437
gene name scml4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32523576 ~ 32576703 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034662
GTCGGATTTCCTGTGCGGGTGTTTTACTCTACGTCGTTTCGCATAGCTTGGCGAAATATCTATATAAACGTTTCACTATAACGCCCCCGTGCCTTGCCGTTTAATTAGATCCCCGGGGTGCGGATCGGTTTGGCACCGTGTCTGCGTGCAAGAAAAACCGGCTGTTTTTTCGTGTTCCCGGAGCTCTGGCCGCGGTCCTCGCGCGACTTCACTTCTGCACCGGCGGCGCGGGAGGAAAATCGAGCCCGCAGTCCAGCTGCAGCGGTTCGGGAAAATTATTCGGCACGACTCGGACTGGCGACAGTCTACGCTTTGCAGCCGCCGACAAGCTGAGTGTAATGATCTGCTAGATGCGCCAGTGGCTGTGGGAATGAGACTGCGGGGCAGGGATTTGGAGGATTCCACTGTCTCCTGGATACCGAGCGTCCTGGGTGTGCAGAGCGTCAGGCTCCGCCTTCGCCTCGACCGCCGTGACGACAGGGGGAGGAGCTTGTGGCAACTAGTTGACCTGGGAGAGGAAGTGCAGAGTGGGCGGCGGCCTCGAGACAGGACTCCTCCCACTTGTTCACAAAGTCTGATGAGTATTCCTGCTGCTCCATCAGTTCAGTCAGGGGGTGGAGAGATGCAGTCACCTGGGGTCATAAGCCCCTCCTTCCTCCCGCCTGCAAGTGGAAAAGTTCCAGGTCGCAAGAGGGGTCGGCCACCCCTGAAGAGGCACCCGGAATATCAAAGCCGCTACCCAGAGTCCCTCCCACCCATTAAAGTGCCTAAGAAGAGAGGGAGGAAGCCGGGCTTTAAGGTCActGAAGTCTCGTCTGATGACCCCTCTAGCCATCTCTCCTCCCAGCAGCACCCCAGAGCCAGACATGAGCTCAATCCCGCAGGACGCTGCTACTATCCCTCACTCCGCCACACCACAGTGTGTATCTATGTGAATAAGCAAGTGAACACGGGTCCTAACCTGGACAGGCAGAAGGTGTTGCAGCTGCCGGATCATCTGGGTCCTGCCAGGCCCTCAGTGGTGCTGCAGCAGGCGGTTCAGGGCTGCATTGACAGTGCATTTCAGCAGAAGGCCGTCTTCACGCTACTCACTGAGGGCTACGGGGGAGAAAAGATCTCAGccacttttgatggtAAACAGCATCTGTTGAGTTTGCCGGTGGTCAACAGCGTGGGCTACGTTCTGCGTTTCCTCAAGAAGTTGTGCCGAAGCCTGTTATGTGAGAACCTGTTCAGTGACCAGCCCATAGCTCCTTCATCATCCCCCTCATCCTCTTCCTCATTCCACATGGAGAAGCACTCAGACGGACAGTCCAAGTCAAACTCAATGGTGGATGATTACCATGGTGATTCAGTGGAGCCCAAACGCTATTCGGTTGATCCCAGTGATTTTGGTGCGATGTCCTCACCATACGCAGCCAGTAAACCTGCATATGGCTTTCGCTCTGCCTCTGCCTATTCTGGAGGAATCTGCAGACAGGCAGCCAGTCCCAGCACATTTCCAGAAGGAAACAGAAGTGCCTACAGTCCGTCCCCAGACGCAGGAGAGGTGAAGCCTCCACCCAGTAAGGATCCGTCCAGGTGGAGTGTGGATGAAGTGGTGTGGTTTATCAAGGATGCAGATCCCCAAGCGCTGGGCCCTCACGTTGAGCTCTTCAGAAAACATGAGATTGATGGCGATGCTCTACTCCTCCTGAAAAGTGACATGATCATGAAGTACCTGGGACTCAAACTGGGCCCTGCTCTCAAGCTCTGTTACCACATCGACAAGCTCAAACAAAACAAGTTCTGA
>TCONS_00034663
ATGCAGTTTCCAGGTCGCAAGAGGGGTCGGCCACCCCTGAAGAGGCACCCGGAATATCAAAGCCGCTACCCAGAGTCCCTCCCACCCATTAAAGTGCCTAAGAAGAGAGGGAGGAAGCCGGGCTTTAAGctGAAGTCTCGTCTGATGACCCCTCTAGCCATCTCTCCTCCCAGCAGCACCCCAGAGCCAGACATGAGCTCAATCCCGCAGGACGCTGCTACTATCCCTCACTCCGCCACACCACAGGTCCTCACAGTGTGTATCTATGTGAATAAGCAAGTGAACACGGGTCCTAACCTGGACAGGCAGAAGGTGTTGCAGCTGCCGGATCATCTGGGTCCTGCCAGGCCCTCAGTGGTGCTGCAGCAGGCGGTTCAGGGCTGCATTGACAGTGCATTTCAGCAGAAGGCCGTCTTCACGCTACTCACTGAGGGCTACGGGGGAGAAAAGATCTCAGccacttttgatggtAAACAGCATCTGTTGAGTTTGCCGGTGGTCAACAGCGTGGGCTACGTTCTGCGTTTCCTCAAGAAGTTGTGCCGAAGCCTGTTATGTGAGAACCTGTTCAGTGACCAGCCCATAGCTCCTTCATCATCCCCCTCATCCTCTTCCTCATTCCACATGGAGAAGCACTCAGACGGACAGTCCAAGTCAATGGAGCCCAAACGCTATTCGGTTGATCCCAGTGATTTTGGTGCGATGTCCTCACCATACGCAGCCAGTAAACCTGCATATGGCTTTCGCTCTGCCTCTGCCTATTCTGGAGGAATCTGCAGACAGGCAGCCAGTCCCAGCACATTTCCAGAAGGAAACAGAAGTGGTAAGAAAGATGATACTTACACGTATTTAAAGTTTTCAATGACTAGAAATACTTACTCCTACAGTCCGTCCCCAGACGCAGGAGAGGTGAAGCCTCCACCCAGTAAGGATCCGTCCAGGTGGAGTGTGGATGAAGTGGTGTGGTTTATCAAGGATGCAGATCCCCAAGCGCTGGGCCCTCACGTTGAGCTCTTCAGAAAACATGAGATTGATGGCGATGCTCTACTCCTCCTGAAAAGTGACATGATCATGAAGTACCTGGGACTCAAACTGGGCCCTGCTCTCAAGCTCTGTTACCACATCGACAAGCTCAAACAAAACAAGTTCTGA

Function

symbol description
scml4 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; olfactory epithelium; and retina. Orthologous to human SCML4 (Scm polycomb group protein like 4).

GO:

id name namespace
GO:0060216 definitive hemopoiesis biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041210-338 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; olfactory epithelium; and retina. Orthologous to human SCML4 (Scm polycomb group protein like 4).

Ensembl:

ensembl_id ENSDARG00000017266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034662 False 1792 mRNA 0.55 9 32523576 32576703
TCONS_00034663 True 1152 mRNA 0.53 8 32552912 32576703

Neighbor

gene id symbol gene type direction distance location
XLOC_017436 sec63 coding upstream 1603 32501748 ~ 32521973 (+)
XLOC_017435 si:ch73-257c13.2 coding upstream 24284 32497260 ~ 32499292 (+)
XLOC_017434 ostm1 coding upstream 32540 32473584 ~ 32491036 (+)
XLOC_017433 CU138515.1 coding upstream 53122 32466886 ~ 32470454 (+)
XLOC_017432 snx3 coding upstream 90705 32406011 ~ 32432871 (+)
XLOC_017438 si:dkeyp-13d11.1 coding downstream 92772 32669475 ~ 32673235 (+)
XLOC_017439 lratd1 coding downstream 180060 32756763 ~ 32758949 (+)
XLOC_017440 NA coding downstream 250717 32827420 ~ 32850103 (+)
XLOC_017441 NA coding downstream 481081 33057784 ~ 33058544 (+)
XLOC_017442 ddx1 coding downstream 598487 33175190 ~ 33189652 (+)
XLOC_017431 BX927123.1 non-coding upstream 121216 32270907 ~ 32402360 (+)
XLOC_017430 BX842669.1 non-coding upstream 282607 32231609 ~ 32240969 (+)
XLOC_017426 BX927258.1 non-coding upstream 800079 31722252 ~ 31723497 (+)
XLOC_017425 BX511244.1 non-coding upstream 1136405 31387055 ~ 31387171 (+)
XLOC_017455 BX296562.2 non-coding downstream 1382867 33959570 ~ 33975292 (+)
XLOC_017471 BX279523.2 non-coding downstream 2084852 34661555 ~ 34663198 (+)
XLOC_017472 BX279523.3 non-coding downstream 2086619 34663322 ~ 34664762 (+)

Expression


Co-expression Network