RNA id: TCONS_00034573


Basic Information

Item Value
RNA id TCONS_00034573
length 499
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_017383
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28364742 ~ 28368137 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGTCAATTCAGCCTGCGAGCTGAGAGAGTAATGAGTCACTCATCATTCTCAACAAAGAAGCAAAGCAATACTGTGGAGTTTAAAAAGTTTTCCTGAGGACGCTTCTCCCTGGCTTTAGTTGTCGGACATGCCACCTCAAATGGATTACTTTTACCACGAGTCAAGAGTTCCGTCCGTGTGCTTGGAGCAGGACGAGGAGCTGCTGGAGCCCGCGATCAGCTGTATGCTGGTTGGGGATGGGGCTGTGGGGAAGACCAGTATGATTGTCAGCTACACCACTAATGGATACCCCACAGATTATAAACAGACTGCTTTTGACGTCTTCTCGGGGCAGGTTCAGGTGGACGGGACTCCTGTGCGGATTCAGCTGATGGATACTGCTGGACAGTGTGGTGAACCCAACATCATTCCAGAACATAACCAAGAAGTGGATCCCTGAGATTCGCGAGTGCAACCCATCCTCCCCCATCATTTTAGTGGGAACTCAGTCAGACCTT

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0071896 protein localization to adherens junction biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0032488 Cdc42 protein signal transduction biological_process
GO:0030031 cell projection assembly biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-031002-10 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and protein localization to adherens junction. Is expressed in several structures, including blastoderm; notochord; segmental plate; solid lens vesicle; and yolk syncytial layer. Orthologous to human RHOV (ras homolog family member V).

Ensembl:

ensembl_id ENSDART00000146905

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034572 lncRNA upstream 96881 28266945 ~ 28267861 (+) True XLOC_017382
TCONS_00036602 lncRNA upstream 235255 28112397 ~ 28129487 (+) False XLOC_017380
TCONS_00036603 lncRNA upstream 235255 28120790 ~ 28129487 (+) True XLOC_017380
TCONS_00036601 lncRNA upstream 363696 27905097 ~ 28001046 (+) False XLOC_017379
TCONS_00034567 lncRNA upstream 431742 27904245 ~ 27933000 (+) True XLOC_017378
TCONS_00036604 lncRNA downstream 33102 28399870 ~ 28401312 (+) True XLOC_017384
TCONS_00036387 lncRNA downstream 89716 28456484 ~ 28476335 (+) True XLOC_017386
TCONS_00034578 lncRNA downstream 275211 28641979 ~ 28646065 (+) True XLOC_017388
TCONS_00034583 lncRNA downstream 437256 28804024 ~ 28806523 (+) True XLOC_017390
TCONS_00034585 lncRNA downstream 483465 28850233 ~ 28852283 (+) False XLOC_017391
TCONS_00034571 mRNA upstream 95280 28266892 ~ 28269462 (+) False XLOC_017382
TCONS_00034570 mRNA upstream 106750 28245587 ~ 28257992 (+) True XLOC_017381
TCONS_00034569 mRNA upstream 110718 28245164 ~ 28254024 (+) False XLOC_017381
TCONS_00034565 mRNA upstream 609728 27749133 ~ 27755014 (+) True XLOC_017376
TCONS_00034563 mRNA upstream 644644 27712714 ~ 27720098 (+) False XLOC_017374
TCONS_00034575 mRNA downstream 40952 28407720 ~ 28418719 (+) True XLOC_017385
TCONS_00034576 mRNA downstream 67428 28434196 ~ 28501429 (+) False XLOC_017386
TCONS_00034580 mRNA downstream 436874 28803642 ~ 28827425 (+) False XLOC_017390
TCONS_00034581 mRNA downstream 437209 28803977 ~ 28815260 (+) False XLOC_017390
TCONS_00034582 mRNA downstream 437216 28803984 ~ 28827760 (+) False XLOC_017390
TCONS_00034549 other upstream 958780 27405878 ~ 27405962 (+) True XLOC_017368
TCONS_00034547 other upstream 1026621 27338006 ~ 27338121 (+) True XLOC_017366
TCONS_00034520 other upstream 1421456 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other upstream 1424187 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034514 other upstream 1462474 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034577 other downstream 111435 28478203 ~ 28478318 (+) True XLOC_017387
TCONS_00034579 other downstream 342139 28708907 ~ 28709023 (+) True XLOC_017389
TCONS_00034614 other downstream 2014330 30381098 ~ 30385319 (+) True XLOC_017411
TCONS_00034620 other downstream 2212245 30579013 ~ 30579691 (+) False XLOC_017414
TCONS_00034627 other downstream 2571166 30937934 ~ 30943094 (+) False XLOC_017419

Expression Profile

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