RNA id: TCONS_00034567


Basic Information

Item Value
RNA id TCONS_00034567
length 1225
lncRNA type lincRNA
GC content 0.38
exon number 5
gene id XLOC_017378
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27904245 ~ 27933000 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGCGCCCCAATTTGCTTACTTATACTgcaccctaaaagtatgtactttttttatgAAGGAAAAATTTATACTTttaagtgtgtaacagaagagtatgcaagctttgggacatactactaactcattaacagatcgttgtgttgcttagttatgagccctgtcaGTCATCCACACATcctccacatttctATGTTAATatccaaacacgtctttatataagttcagtattgttgttgcagatgaaatgcAATTTTAcacgatttaaatattttccagtgggctattcattaacagtcattcaaacatctttacccAGCCTGTCTACTTGATGTTTGGTCTCATGCGTCCATCATGTttatagtttatttacactttttacccgCATTTGTAATTCTAATAAAGTTCATGTCCAacatgcaatgtattgtattctagaaacatccttgcaggtgtgttgaagcaagttgaagttaaaatctgcaggacatcggcccttcaggaccgagtttgcgaATTGACAAATTATAATATATGTGGTACCAATGAATCATCAAGTCAATTATGGGAGTGCTTTGTTAAATAGTTCTGAGGCTTAACGAGAGATGTATAGAAGATGTATATTATTAGATGTATATCAAcgattacaaaaaaattaagtaatggtTTTGGACTAGCTCTGCAAATAGAGGTACTGTAAACTGTATTGTTTATCCTTGGTttcaatcaaactaaatctgCCAAATAAGAATAGACCCTTAAATAGGAAGGCTTGAATtaaagacaaataaacaaatcaaaaagtTGACATGATGTCATAGGATGTGACAATAAAAAGAGAAGATGCTTAGTTTTTCTCTTTATCACTGCAGTGTTGCTCATTACAGTTTAATACAGATCTTTAAGAGGTTGCATTTTTGTGTCTTAATGTGAGGTGAAtgtgttacccactgcaccacagataaagaaggttgctggttcaagccccggctgggtcagttggcatttttgtgtggagtttgcatattctccccgtgttcacgtgggtttcctctgggtgctccagtttcccccacagtccaaagacatgtggtacaggcgaatttagtaggctaaattgtccgtagtgtacgagtgtgaataagtgtgtatagatgtttcccagaggtgggttgcagctggaagggcatccgctgcgtaaacatatgctggataagtttgcgg

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022843 voltage-gated cation channel activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153000

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034566 lncRNA upstream 122763 27755471 ~ 27781482 (+) True XLOC_017377
TCONS_00036386 lncRNA upstream 164426 27738527 ~ 27739819 (+) True XLOC_017375
TCONS_00036600 lncRNA upstream 164465 27735811 ~ 27739780 (+) False XLOC_017375
TCONS_00036599 lncRNA upstream 314081 27579744 ~ 27590164 (+) False XLOC_017371
TCONS_00036602 lncRNA downstream 179397 28112397 ~ 28129487 (+) False XLOC_017380
TCONS_00036603 lncRNA downstream 187790 28120790 ~ 28129487 (+) True XLOC_017380
TCONS_00034572 lncRNA downstream 333945 28266945 ~ 28267861 (+) True XLOC_017382
TCONS_00036604 lncRNA downstream 466870 28399870 ~ 28401312 (+) True XLOC_017384
TCONS_00036387 lncRNA downstream 523484 28456484 ~ 28476335 (+) True XLOC_017386
TCONS_00034565 mRNA upstream 149231 27749133 ~ 27755014 (+) True XLOC_017376
TCONS_00034563 mRNA upstream 184147 27712714 ~ 27720098 (+) False XLOC_017374
TCONS_00034564 mRNA upstream 187828 27713210 ~ 27716417 (+) True XLOC_017374
TCONS_00034562 mRNA upstream 210378 27691307 ~ 27693867 (+) True XLOC_017373
TCONS_00034560 mRNA upstream 216788 27647436 ~ 27687457 (+) True XLOC_017372
TCONS_00034569 mRNA downstream 312164 28245164 ~ 28254024 (+) False XLOC_017381
TCONS_00034570 mRNA downstream 312587 28245587 ~ 28257992 (+) True XLOC_017381
TCONS_00034571 mRNA downstream 333892 28266892 ~ 28269462 (+) False XLOC_017382
TCONS_00034574 mRNA downstream 431742 28364742 ~ 28368137 (+) True XLOC_017383
TCONS_00034575 mRNA downstream 474720 28407720 ~ 28418719 (+) True XLOC_017385
TCONS_00034549 other upstream 498283 27405878 ~ 27405962 (+) True XLOC_017368
TCONS_00034547 other upstream 566124 27338006 ~ 27338121 (+) True XLOC_017366
TCONS_00034520 other upstream 960959 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other upstream 963690 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034514 other upstream 1001977 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034573 other downstream 431742 28364742 ~ 28366768 (+) False XLOC_017383
TCONS_00034577 other downstream 545203 28478203 ~ 28478318 (+) True XLOC_017387
TCONS_00034579 other downstream 775907 28708907 ~ 28709023 (+) True XLOC_017389
TCONS_00034614 other downstream 2448098 30381098 ~ 30385319 (+) True XLOC_017411
TCONS_00034620 other downstream 2646013 30579013 ~ 30579691 (+) False XLOC_017414

Expression Profile

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