RNA id: TCONS_00034563


Basic Information

Item Value
RNA id TCONS_00034563
length 4697
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_017374
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27712714 ~ 27720098 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTGCGGAAGTTCTTTCATCCGCGCTGCACAGAAGGGGCTTCGCCCTCGAGATTAGCTATTCTCGTCCCAAGTTTTCGCTTGGACGAAGGCAAAAGAGGTGGAACTTCTTCGCTCTGTGTTTTTACTCGAATTCTGCCGTTCGCTTCAAGTTAGCGCCCATTACCGTGGGGTAATGGCAAGGCCAAGCCACAGTGAGCATGTCCTGCAGCAGCTCAACAATCAAAGGGAGTGGGGTTTCCTCTGTGACTGCTGCATTGCCATAGGTGACATTTATTTCAGGGCTCACAAGGCCGTGTTGGCTGCCTGCAGTTCTTACTTCAGAATGATGTTCATCAGGGATCAACAAGGTTCTGCCCGGTTTGATCTTAGCAACATGCAGATCAGCGCAGAATGTTTTGATCTCATCCTGCAGCTCATGTACCTTGGCCGAATTGCTGTGGATCACTATGAATTTGAGGAACTGAAAGCATCTATGGCCTACCTACAAATGTACTACATCCCAGACTCACTCGAGGACCTAAGAGACATCCGAACATCTAATCTCACTCCCTCATCCTCTGCATCGTCCTCTTCATCATCCAGCTCCTCGTCCTCATCCAGTGTGGTCGGAGGCAAGATGATGTTTGGCGTTAGAATGTTTGAGCAGCAACGGCCGAGCCCTTCTGAGAATGAACGTGCAACGAAAGCCCCAACCACAACTGCTCGTCAGACCATTAACATCTCAACTGTCAGGCCTGCTGAAGATGTGGTCATACCACACCCTCCACCACACTCAGAGACCGTTGTTGACCAACCATGTGACTTGAGAAAGAGAACATCAGGTCGAAGCTCTGCCATGAAAGAACGTCCTCGATTTGGTCGCACATACACGTGCGATGACTGTGGCTTTGTCTTCAGCTGTGAAAAGCTACTCATTGAACACATCCTCACATGTACCAATCGCAAAGCTTTCCAAACACCCAAAGTCAGCAAAGAGGTTTACAGTGACAATGGCAAAGCCGAGAGTTCGACTTCAGAGGGTACAGATGAACAGAGAACACTTTGCAAGGGGGAAGATGAGTGGTCGGACCACAAGCCGGACATGGAGACGGTGATCAGGTCTGTAGCCTCTGGCATGGAAAGTGAAAATGCCTTCTCTAGGAATATAACCATTAAAGTGGAACGGGACGATGATTCCGAGACTGATTTGGAAACTATAAAGGTTGTAAAGGTTGGGAACCTTAACTTAGGCAGCTGCAAAGTTCGTACCAGGGCATTCAAAGACAATCTTGCAGATCAGATTAAGTTTGACAGTGAGGAAGATCCTGGAGTGTCTGCCATGGATGCTCTGGAGGGCAAAAGCACAGAGTTGGACACCGATCTAAAGGTACATCGAATCAAAGAGGAAAAGCAAGATGGCACATGCATACCATGCGAGTTATGCGGAGCCCTGTTGACGGAGGAGGAACAGTCTGCTCATTACATCTCCAACCACATGGGACATATCTGTGCCTGTGGAAGGTGTGGCCAAGTGCTCATTAAAGGCAGACAGCTGCAGGAGCATGCAGAGCGCTGTGGTGAACCCCAAGGTACCGAGATGGACTCCCCAGGTGAAGATTCGCTTCTACTTGAAGATGCCGAAGCTATGGAAGAAAACTTGCTGGAAGGTGCTGACCTGGGCTTTCGTTGTCCACTCTGTGGTTTGATATTTGAAAGCGAAAGTCTTGCAGTGGAGCACACGTTGGCTTGCCCGGAACAGGAGCCCTTCCGACCCGTCATGTTGGAAGATGGTGGTGAGCCAGACCATCGGCGCAAGCATTTCTGTGCAATCTGTGGCAAGGGCTTTTACCAAAGGTGTCACTTGCGGGAGCACTACACTGTGCACACCAAGGAAAAGCAGTTTACCTGTCAGACCTGCGGGAAACAGTTTCTGCGTGAACGACAGCTTCGGCTGCACACTGACATGCACAAGGGAATGGCGCGATATGTCTGTCCTGTGTGTGATCAGGGTACGTTCCTCAAACATGATCATGTTCGACACATGATCTCTCACCTGTCTGCCGGAGAGACTATCTGCCAGGTGTGTTTCCAGATTTTCCCCAGCGGTGAACATCTGGAGAAGCACATGGATGTTCATCTGTACATCTGCGGCGTTTGCGGAGAGAAGTTTCGCCTCCGTAAAGACATGCGGAGCCACTACAACTCCAAGCACACCAAGAGACAATGAGAGGCCTCTCTCTGCTACCCTTGAATCTTTAAAATAAGCCATACTGTAAATGTGAGAACCAATCTATGCACTTAGACACCAATCGTAACCTTTACAACTGCACTTTCTGTGTGTATGCAAATTCTGGATGTGttgctcaatgtttttttttttttttttttttttttttttggtgggttATAGTGCCTCAAGCTTTTGTCTTCATTTTCTAATTCTTAGAGATGGATATCCAGACACTGGTTAAGTCTAGATATTGACTAAATCACACTATCAGTGGTGTTTCAGTTGAAAATGCTATTTAGATCTGTAGTTATGAAATTGGCCCAAGGCTAATCGTTTTGATTACTTCATGAAGCTTTAATGATGATGCACATTGGCTTGtgacattctgtcatcatttttacTTTAGTATTTAAGAACTTTTGTTAGGTGGGTCACTGTGTTTTGTTATTGGTGGTGCTCTTATTTCTAGTGAACACAGCACATACTTGTTccgttttgtttcatttcaagtTGTTCTGGTGTCTTTACCTGTTATCGTATGTAATGTTGAATTGCGCttagggatagtttacccaaatgACGTCTGTTCTCTCACTCTAATGTTGTTCTAAACATGTTAAGTCATATTTTGCAGAACtcctaaatatatatttagaaaaaacatcttcatttatttaatgtccAGTGTCCTTGCAGGGAAAGTTAAAACCCACTGACTTGTAATGAAAtctattaaaatttgtttttaaaattgctaAAAACATCTTCTCTTGTGTTGTACAAGAGTATAGGTTTGGAACATGAAGGGGATAAATGACAGAACTGTAATAtttaggtaaactatccctttaaaaaaggaAATGAAAAGAGGATGGATTGCTATGATATGGATTGCTAAAAGGCACTTTCCCTCCTTGCACCAGAACACTAACAATTCTGATGAAAAGCAAAGAAAACACTCATGATGATGGCTTTCAGCTTTCTGTACATGCTTGATAATCACTCATACAAAACCCTGAAATCTATGCAATCTGTTCATCCCTTATTTAGCTTGCATTCACATATTATGTGATTGATGTGAACAGTTGCAGCAACATTTATTGTGTGTAATTATTTCCCTATCCCAAAGATCTTCATTTAATATTCATATAAATGGAAATGTAAAATATCTGGGTTTATACGTAAACTATCTGTTTCTAACAAGGATTATCTGGTATACAGTATGTATCGGCCTATGCTGAATTTGTTTAGGCAATCAAGCTTTATGCTTTTATCCATCTAAAGCTTAAATGGGCTTTTAAGAGGTCTTAACATTTCTGATATTTCCTAGCAAGCATTTTTGTGcgtttaaaagacatctaaatagatttcttggctaaaacaaagctaaatttgaACTATCAGTGAAAATGAATTGACGTCTCGCAACAACAATGTTAGCTGtcttttagattttcactgacagcccaaatttagtcttgttttagccaagacgtctattagatgttttGTAAACACGAAATTGCTTGGTGGGTTCATACATTGTTGTGGCTTGATGTGAAGTATGTGGAAACAATGCTTGCACAAGGGTGTAGGgtaaattattattacatgtttGTATTAATAAACAAGCACTTCGCCATTTAAATATCTTGTCTGAAATATCaggttggtttgtttttgtttttttcaaagttCTCTTGGTGTTCATCTAGGCTATGAGATGATAGAGATTAATCTAGACACAGTGAATGATTGGATTAAAAGCAGACAGTCTGGCTGAACTCGGGACAATTGGTGCTCCACACTTCTGTTTGGCATAAGTTgtcacatttaaagggatagttcacccaaaactgaaacttCATTTGCTCACCGTTcccttgtcacaaacctgttcaagtttctttttttctgtagaacacaaaaggagttagtttgaaacatttttgaaaccaattgacttccatagtatttgtttttccttctatggaagtcaatggtttctaacatttttcaaattatattgttttgtgCTCAACTCAAAAAGGAAACTCATTAAGGTATGGAATGGacacacttgagggtgagtaaatagagagtatatattcatttttggatgaactatctcaTTAATTAAGCTCTTCCGGCTAACACAACTCAATGTAGGGATTGTGCAAAAGTATAGCAAGACAGTGAGGTCTGTGCTGCTCACTTGTATTCTTTGTTGGTAgagattattaaataaaaagggttattattattattaatacggACCAAATTTACAGACAAACGGCTCAAATGTTTATGCTGGCCATTCAGCGGTGTATTTGAACTGTGTTGTCATCTAAAGCGGGGGGAAAGGTGTATATGAGCGATAGAGATTATTGCAAGgaatatatgcaaatatagttttgatcatattttttctaatTCCTTCAGTGTTTCATTTGttctttgatttaaaataaaagattcaaaATTG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041001-126 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human ZBTB1 (zinc finger and BTB domain containing 1).

Ensembl:

ensembl_id ENSDART00000008306

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036599 lncRNA upstream 122550 27579744 ~ 27590164 (+) False XLOC_017371
TCONS_00034558 lncRNA upstream 123707 27585091 ~ 27589007 (+) True XLOC_017371
TCONS_00034557 lncRNA upstream 127270 27579772 ~ 27585444 (+) False XLOC_017371
TCONS_00034553 lncRNA upstream 281900 27427113 ~ 27430814 (+) False XLOC_017370
TCONS_00034550 lncRNA upstream 294898 27416520 ~ 27417816 (+) True XLOC_017369
TCONS_00036600 lncRNA downstream 15713 27735811 ~ 27739780 (+) False XLOC_017375
TCONS_00036386 lncRNA downstream 18429 27738527 ~ 27739819 (+) True XLOC_017375
TCONS_00034566 lncRNA downstream 35373 27755471 ~ 27781482 (+) True XLOC_017377
TCONS_00034567 lncRNA downstream 184147 27904245 ~ 27933000 (+) True XLOC_017378
TCONS_00036601 lncRNA downstream 184999 27905097 ~ 28001046 (+) False XLOC_017379
TCONS_00034562 mRNA upstream 18847 27691307 ~ 27693867 (+) True XLOC_017373
TCONS_00034561 mRNA upstream 25257 27647436 ~ 27687457 (+) False XLOC_017372
TCONS_00034560 mRNA upstream 25257 27647436 ~ 27687457 (+) True XLOC_017372
TCONS_00034559 mRNA upstream 29470 27646772 ~ 27683244 (+) False XLOC_017372
TCONS_00034555 mRNA upstream 159829 27464721 ~ 27552885 (+) False XLOC_017370
TCONS_00034565 mRNA downstream 29035 27749133 ~ 27755014 (+) True XLOC_017376
TCONS_00034569 mRNA downstream 525066 28245164 ~ 28254024 (+) False XLOC_017381
TCONS_00034570 mRNA downstream 525489 28245587 ~ 28257992 (+) True XLOC_017381
TCONS_00034571 mRNA downstream 546794 28266892 ~ 28269462 (+) False XLOC_017382
TCONS_00034574 mRNA downstream 644644 28364742 ~ 28368137 (+) True XLOC_017383
TCONS_00034549 other upstream 306752 27405878 ~ 27405962 (+) True XLOC_017368
TCONS_00034547 other upstream 374593 27338006 ~ 27338121 (+) True XLOC_017366
TCONS_00034520 other upstream 769428 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other upstream 772159 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034514 other upstream 810446 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034573 other downstream 644644 28364742 ~ 28366768 (+) False XLOC_017383
TCONS_00034577 other downstream 758105 28478203 ~ 28478318 (+) True XLOC_017387
TCONS_00034579 other downstream 988809 28708907 ~ 28709023 (+) True XLOC_017389
TCONS_00034614 other downstream 2661000 30381098 ~ 30385319 (+) True XLOC_017411
TCONS_00034620 other downstream 2858915 30579013 ~ 30579691 (+) False XLOC_017414

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_05975085_05977148.mRNA True 2526 mRNA 0.49 1 CI01000325 5974947 ~ 5977472 (+)