XLOC_017373 (si:dkey-1h6.8)


Basic Information

Item Value
gene id XLOC_017373
gene name si:dkey-1h6.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27691307 ~ 27693867 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034562
AGAAAGGCGCGTAACCTGCTGTGCTGAGCCTCTGCGCCCGCCAGATCTGCGAGTGGATTTATAAACGAATCTCCTCGCTCTTCACAGCCGTGAGAAGAGTTTACGTCGTTCTCTTCACTTTACAGCATCTCCACATCTTTATGCTGTCAATATGTAAGCTGAAAATCACCCAGTTGTGTAATCAATCCTATATTCCCAGTAAGGACTATTATTGACTTTGGTGCTGTTTGATTAACCATGTCCACACAAGAGAATGAATTATCCGATGGTCAGGAGAGGGTTGGTTTGAAGAGAAAACTGACTGGTCCACCGAGACTTCTGCTGGGGAAGTCCAAATCAAAGGAGAAATTGGAAGGTAAATCTCAGAGAAGGCAAAGAGAAGCTAAATCTTGTGATGGCACAACGGACAATAATGATCAAGTAAATGATGGAAAAACCAATGAATCTTCACATATTACCCACAACAGCCCTCAAAACGCCTCAGAGGGGACAGCAACCCAGCCAGAAGATACCTCAAGAATTCTTGTAACATTGGAGGAGAGTGAAAACAGGGATGAAAATATGGCAAGTAAAATAATGACCAAAAGTTCTTCAAAAGCATCCATTAAGAGGACATTTTCCTCACTTCTCAGGCGTGGAAAAAGGAAGGAAAATGAGTCTTGGAATccaaaagaaactaaaaaaaatataaacaatgctCAAAACAACACGTGTGAGAATGAATTAAGGGATGCAAACAACAAAGAAGTTCCTAATGGAAAAGGTAAAAAAAGGGGTTTCTTCACCGTTTGGTTAATTTCTAAGAGATCTGCAACATCTGATGTTGGTCTAGGAAGGGGATGTAAAGAGGAAGATGGTAGAATGGATTCTGAGGACATTGCAGCACCGAAAggtttgacatttaaaaagatctacCGCATCTTTTCTAGAAAGAAGAAAGCACCCCCTATTGATCAGTTTGAGTGTAGTGCCCCTAGCGCATCACAAACTGAAGTAGATGATCAACTGGATCAATCACCTGCCGCTGAGATGGACATTTCCAGGCTCAAGAGAGAAGATAACCAAATGGAAAACCGAGAAATGCAAGCAGAAATCGTTCCAGAGACTTTTACATTCAGTGCCGAGGTCAGCATTAACACAAATATTGAGTCTAACCACACTGATGAGGAGCAATTATGTTCTGACCAAACCCTGaggatgaataaaaatgaatccCAGGAGCTTCCAACTAGTGGTCTTTTGGATTCTGAGGTTCTGCCATCGAGTTCGATTCATTGCAATATTGTCTCCGATTTGCCGGTCACATCATCAGATAATGATCAAGTCTTAAAGCCAATTGAAAACGATCTTAAATGCAGGCCAATGATTACTAtagagcatgcaaactcctcagAAGAAGAGAATGAGAACGAGCCACCACAGTTTGATGCTCTTACAGTCAATGGGTCCtggcaacatttaaaaataaacggTCTTACAAACAACACTCTACATCCAGACGTGGACCACAGCCGATGTAATGAGAGCTTACTGATTCAGACAGCAATTTCAATGGTGGAAGCAGCCATCCGTGGTGCTGTGGAACAGTTCACAATTGAGCAGCAGCACAATCAGATAAGTTTGGACCGCGTATAACCAACCACCCACAAATTCTAACTCTATCTGTATTTTAACTGTATTCAGCGAATGCTTTCTTATTTCTTTAAAATGGTATATATTTGGATGTAACTGCTAAAAAGTTTAGAGAGGAATTTCTTGTGATTTTAAATGTGAAACTTAAATATACTTCTGTTTTTCCATATGCATGACTGTTTTTGCATACtgtgtaaaaatgacaaaatccaCACCATACACAAACACTGAAGTAGCATATGTAGCTTGCACATACACGTTCAGTTGTTCTTGCACTATTTagcttttagtttttattaattaaaatttttattaaactctttaggtttatt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130603-8 No description available

Ensembl:

ensembl_id ENSDARG00000096703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034562 True 1964 mRNA 0.40 2 27691307 27693867

Neighbor

gene id symbol gene type direction distance location
XLOC_017372 mthfd1a coding upstream 3850 27646772 ~ 27687457 (+)
XLOC_017371 NA coding upstream 101143 27579744 ~ 27590164 (+)
XLOC_017370 kif26aa coding upstream 138422 27426507 ~ 27552885 (+)
XLOC_017369 BX255913.2 coding upstream 273491 27416520 ~ 27417816 (+)
XLOC_017368 dre-mir-203b coding upstream 285345 27405878 ~ 27405962 (+)
XLOC_017374 zbtb1 coding downstream 18847 27712714 ~ 27720098 (+)
XLOC_017375 NA coding downstream 41944 27735811 ~ 27739819 (+)
XLOC_017376 vrtn coding downstream 55266 27749133 ~ 27755014 (+)
XLOC_017377 BX255917.1 coding downstream 61604 27755471 ~ 27781482 (+)
XLOC_017378 BX255897.1 coding downstream 210378 27904245 ~ 27933000 (+)
XLOC_017365 NA non-coding upstream 318857 27297144 ~ 27372450 (+)
XLOC_017379 NA non-coding downstream 211230 27905097 ~ 28001046 (+)
XLOC_017380 NA non-coding downstream 418530 28112397 ~ 28129487 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_05963237_05964658 NA coding CI01000325 null 5963023 ~ 5966130 (+)