CI01000325_05963237_05964658


Basic Information

Item Value
gene id CI01000325_05963237_05964658
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5963023 ~ 5966130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_05963237_05964658.mRNA
ATATAAAAGGACAAATAAGTCAATAAGTATGTTTCAACCAACAAGTGAAATACAGAAAACCTTTAACTTAAGCAATACAATGTTTTTGTGTTTGTTTGCAGCATCTCCACATCTTTAAGCTAACAGTATGTAAGTGGAGAAAACGCCCGCTTATGTAATTGATCCAATATTGCCAGTGAGAACTGTTATTGACTTTGGTGCTGTTTGATTAACCATGTCCACACAAGAGACAGAATTACCAGACTGTCAGGAGAAGGTGGGCTTGAAGAGAAAACTGACGGGTCCACCAAGACTTTTGCTGGGAAAGTCAAAATCAAAGGATAAATTAGAAGGTAAATCACAGAGAAGGCAAAGACAAGCTAAATCTTGTGATGGCACAGTGGAGAATAATGATCAAGAAAACAATGATGGCAAAGACAATGAATCCTCACTTATTACCCACCATAGCCCTCAAAAAGCCTCAGAGGAAAGGGAAACCCAGCCAGATGCTCCAGGAGATACCACAGGAATTCTTCTAACACTGGAGGAGAGTGAAAGCAAAGATGAAAATATGGAAAGTAAAATGAAAATGACCAGAAGCACTTCAAAAACATCCATTAAGAGGACATTTTCCTCACTCCTCAGGTGTGGCAAGAGGAAGGGATCAGACAGAACAGACAACAAAAACAAAGATCAACAAAACATGTGCAACTCGAATAAATTGAGTAATGCAAACAATAAGGAGGTTCCTAATGGAAAAAGTAAAAAGAGAGTTTTCTTCACAGTGTGGCCCATTTCTAAGAGATCTGCAACATCTAATGTCAGTCTAGGAAGGGGATGTAAAGAGCAAGGTGGCATGGTTTGTCAGGAGATAACGGCACCGAAAGATTTGACATTTAAAAAGATCTACCGCATCTTTCCAAGAAGGAAGAAAGCACCTCTTATTGATCAGTTTGAGTGTAGTGCTCCCAATGCAACACAAAAAGAACTAGCTGATCAACTGAATCAATCACTTCCAGCTGTTATGGACATTCCCAGTATCAAGAAAGAAGAGAACCAAAAGGAAGAACAAGAAATACAAGTGGAAAGCATTCCAGAGAGATTTACATTCAGTGCAGATGTGAGCATTAACATTAAGTCTGACCACATGGATAAGGAGCAGGAAATATGTCCTGACCGAGATGTGAGTATGAATAAAGATGATGACGAGGTGTTACAAACTAGCGGTCTTTTGGATTCTGATGTTCCTCTATCATGTTGCAGTGGCCGTAGTTTCGACTCAGAGTTGCCGGGCACATCATCAGCACATGATCTGCTAGTCTTAAATAAAGAGTCTATAGAGAATGATGTAAAATGCAGGCCAGTGATTACTATCGAGCATGCATACTCATCAGAGGAAGAGAGCATGAATGAGGCACCACAGTTTGATGGTCTTACAATGAATGGGTCCTGGCAACATTTAAAAATAAACAGCCTAACAAACAACACACTACATCCTTCTGACCTAAATGTGTCTACTGAACTAGACCACGGCCGATGTAATGAGACCTTACTGATTCAGACGGCAATTTCAATGGTGCAAGCAGCCATCCGCGGTGCTGTGGAACAGCTCACAATCGAGCAGCAACACAATCAGATAAGTTTGGACCATGCGTAACCACATATATTCACATTCTTTTTTCAGTGAATGAATTTCGTATTTCTTTAAGATGGTATAAATAAGCTGCATATAACATAAAAGAGAAGAGGAATTTAATGTGATTAAATGTAAGAAGACAGCAAAATCCCCAGAGTTAAATCAACTCTGCTCAGAGAACATATGGTCCCTCTCTACACAGAGTTAAAATAACACTTAAGCAGAGTTAAAGTTAATGAGATAATATGCTGTTTGTGGAGTTGTTTATTCAGATCTTGAAAGATTTAATGTCTTTTATCTTCAGTTGATTTCATCTAAGGCTGTGGCTGGAAGTCATTTGTAGTTATTGTGTTTCTCTTCAGTGATTCTGCTTCTTGTTAACAGCAGGTGTTCATCACTAATGCTCAATCATAACTTAATCACTTAATTATCTCATTAACTTTAACTCTGCTTCAGTGTTACTTTAACACTATATAGAGAGGGACCATATGTAATCTGAGCAGAGTTGATTTAACTCTGGGGATTTTGCTGTGCACATGTATAAATATTGATAATGTTTGTAAAGATACAATTATTGATGTCAGATTGTGGAAAAGTTTGTATTCATTGTGTAATTTAAATGCTGTAAATTTGAATGCATGATTAACCTATTTTCATGATCGTTTGTACACTTAATGTTACCTTCTATTGTTCATATTTTTTATACTGTATTATTTTCTTATGTTACTGCAATCTAGTTTCTATAGCAATGGATATCTCACACATGATTCCAAGAAGACACTGAGCCACATGCATATGATATGTTGTGTAAAAGTCAAGGCAACGTTTTTATGGAAATAAGTGGTCTAAGAACCCAGGTGTGTGTATCGGTTGCTCAATTCATATTTAAATGAGGCCCTGACTGAAGCCTACAGTACAGTGAAGTTGTTAGATGTTATGTTAAGTGACTGTATACTGTACATGACAAGCTTGGAAGCAATGCTTGAAGATAATGATTACACCGAGTTGGCAGCAGGGAAGATGTTTGCTTTTGTGACTACATGCTACTCCCTTGTGGCACTAAGATGTTACTACAAGATGGTCAGTTCCAGGGATAGTACTCCCAAAAAATAAAATTCTGTCATCATTTACTCACCCTCATGTTGTTGCAAACCTGTATAACTTTCTTCCATATGTGTAACACAAAAGAAGATATTTTGAAGAACTGTTTTTGTCCATGCAATGAAAGTCAATGGGGACCAAAAAAAGTTCAAAGTTGTAGAATAAAGTCATGCAGCAGGTTTATAATGAAAAGGTTTAAGGATTTGAGGTGTAAATGATGACAGAATCTTCATTTGGGGGTGAACTATCCCTTTAAAGTCAGTTCCATTGAAACCAATGACAAGTATACAACCAAAGCAGATGCATTATAAATCACAGTTTATTCAATGTGCCATTTATTTAAAAAAATAAATAAATAACCAAACACATTATCACACAAGTGCTGATGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_05963237_05964658.mRNA True 3108 mRNA 0.37 1 5963023 5966130

Neighbor

gene id symbol gene type direction distance location
CI01000325_05941338_05958627 NA coding upstream 4022 5941338 ~ 5959001 (+)
CI01000325_05852745_05882303 KIF26AA coding upstream 80342 5852522 ~ 5882681 (+)
CI01000325_05806682_05840917 NA coding upstream 122106 5806682 ~ 5840917 (+)
CI01000325_05793873_05794963 TMEM179 coding upstream 167910 5793873 ~ 5795113 (+)
CI01000325_05765629_05781041 PPP4R4 coding upstream 181567 5765629 ~ 5781456 (+)
CI01000325_05975085_05977148 ZBTB1 coding downstream 8817 5974947 ~ 5977472 (+)
CI01000325_06007394_06009436 VRTN coding downstream 41146 6007276 ~ 6010414 (+)
CI01000325_06045898_06049007 NA coding downstream 79768 6045898 ~ 6049364 (+)
CI01000325_06262523_06270980 DLL4 coding downstream 295978 6262108 ~ 6272168 (+)
CI01000325_06275779_06276922 CHAC1 coding downstream 308448 6272612 ~ 6277368 (+)
G465958 NA non-coding upstream 52333 5910403 ~ 5910690 (+)
G465922 NA non-coding upstream 70441 5892231 ~ 5892582 (+)
G465732 NA non-coding upstream 248618 5663051 ~ 5714405 (+)
G465726 NA non-coding upstream 308689 5654059 ~ 5654334 (+)
G465723 NA non-coding upstream 323372 5639218 ~ 5639651 (+)
G465979 NA non-coding downstream 177877 6144007 ~ 6144156 (+)
G466010 NA non-coding downstream 222450 6188580 ~ 6188819 (+)
G466011 NA non-coding downstream 223093 6189223 ~ 6189915 (+)
G466014 NA non-coding downstream 225979 6192109 ~ 6192391 (+)
G466015 NA non-coding downstream 227288 6193418 ~ 6193776 (+)
CI01000325_05655953_05691697 PRIMA1 other upstream 269040 5654840 ~ 5692630 (+)
CI01000325_05549713_05553140 TMEM251 other upstream 408446 5549713 ~ 5554577 (+)
G464950 NA other upstream 872085 5058456 ~ 5090938 (+)
G463724 NA other upstream 3234573 2728206 ~ 2728450 (+)
G463566 NA other upstream 3399288 2563155 ~ 2563735 (+)
G466144 NA other downstream 532636 6498766 ~ 6501978 (+)
G466137 NA other downstream 651070 6617200 ~ 6619471 (+)
G466236 NA other downstream 1037487 7003617 ~ 7004655 (+)
G466227 NA other downstream 1345953 7312083 ~ 7314812 (+)
G466219 NA other downstream 1515906 7482036 ~ 7486407 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017373 si:dkey-1h6.8 coding NC_007131.7 CM002904.2 27691307 ~ 27693867 (+)