CI01000325_06275779_06276922 (CHAC1)


Basic Information

Item Value
gene id CI01000325_06275779_06276922
gene name CHAC1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 6272612 ~ 6277368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_06275779_06276922.mRNA
GGATAAAACTGAATGGAGATGTTTGAAGGATGTTGCAGTTTCTGGTGACAATTTGACTAGACAATCGCATTTAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAATGTTGGGGGAAAAATGGAATCGGTGGACATGCTTAGCAAAATCACCTTCATTTCTCTGTCTACCTATTTATCTATGGCCCGAGCCTCTTACACTCCAGCATCCCGGCGTCCCTACACAGAAAAAGCGATTAAAATTAAGCATATTATATTATTTTATGTTACATTTTTTTGTATTATATAATAGAAATTATTATATTATCTTCCAATGAAGACTTCTTACCAAGTCAAATTTGAAACCTTGATGAAACCTGATTCGGTCTCGAATAACATTCTTGGGAGGCCTGATGCAATACACTCACTACGTACTATGCCTGTTTCTCTGCTTGAAACGCTTGTTTCAAGTTGCATCAGCCGAGCAGACTTTAAGCGACAGATCTGCTGACGAATGAGCGTGAGAGTATTCTGTGACTGACAGCTGGCTCGCCTATGAAATGAAACAACCGCGCACGTTTTTTCCTGGTTCGTGAGCCAATCAGACAGTTATGCCCTTATAGAGACACAGCGAGATGAATTGATTGGATAGAAGTCAAGATGCCCCGCCCTATCTACGCTATGATTGGTCCAGATTTTGAGCAGGGTTAGATACGCCCATAGACATCGTCGCATATAGTCTGCCTCAAAGCAGCCCACATTTCATCAGCCGCCGAGGAGGAAAAGTAGCACGGCAGCCTAGGGTGCTTGAAAGCAACGGTTAAAAGTCTATTTCTTCTGACTTTATAGTGACGTGTGATTGGCTGGGTAGAGGTTTGTTGGTAAACAGGAGGCTGGCTGGTGAGCTAGCAACGGTTTTTGTGTTTTATTCAAATTGAAAGAGCCGAAGAGGCCGAGATGGAATTTTAAGGCAATAATGCGGTAACTGCACGGCATCGGCATGCACCAGGCACAGAAAAGCGATTTGCGGGACTGGACCATCACAACTGCTAAGCAGTTGGGCTCTAATACCGTCCGCGGTATAGCCGTGAGCCAACCGATACCTCTCCTACTCGACAGGAGGAAGCTAACGCTAGCTAGTTAGCCTGTGGGCCCATTCATTTAGCTGTTACATCAAAGCGTAAGTTACACTACTACCCTTCCTATCCTCATACCATCCTGTAAAGATGAAGCCTCAAGACATCGTCGCTGGAAAATCCAGTCTGTGGATCTTCGGTTACGGCTCGTTGGTTTGGAAACCTGACTTCAAGTACAAGAGGAGCAAGGTCGGTTACATTAAGGGGTACAAGAGACGCTTCTGGCACGGGGATAATTTTCATCGTGGAGATGATGAAATGCCCGGAAGAGTGGTGACGCTCATCGAGGAGGATGACGCGTGCACCTGGGGTGTTGCCTTCGAGGTGACTGGCTCTCAGGTCGAAGAGTCTCTCAAGTACCTGAACGTGAGGGAGGCGGTGAGAGGCGGCTACCTGACCCAGGCCGTAGATTTCTTCCCGCAGGGCGTGAATCAGTCACCTGTCCAGGCTCTGGTTTACATCGCCACAGCTGACAACCCTATTTACCTGGGGCCTGCAAGCACGGAGGAAATCGCCGCTCAGATCGCTGTGTGCAAGGGGAAGTCGGGCCACAACATCGAGTACCTGCTTCGCCTGGCGGAGTTCATGAGAGTCAGCTGCCCTGATGTGGACGACCCTCATCTGTTCTCTATCGAGGCAGCTGTTCTTGCAATCATTAGACCCATATTGTTAGCATCCCAGAAACCTGTATCTTCTGTAAAACATTAAATGTTACTGAGGCTATCAGCATCTAGTCCAAACACCATTAAGGTCCTAACGTAAAGTTAATGTTGCTGTCCTTGAGGTGTGAATGTGATTTAGTGTCTGTTCTCAAATATTTTATTTTCTCTATACGAAGCGATTTAAAAGTTACTCCACTAAGGTAAAGATACTGCATTAAGGGAACATGGTGGTTTAGGTTGTTGTTTTGATGCTATGGCATGACATCATGCATACTGTCAGTTTTCGTCATGTGCTCTTTACTCAAGTATGTGGTGCTGTGGTACAAATGCATGCTTGTGTGACAATGTATTGCCAAAGTTTGTCGAGTTCTAACTGTCAAGTGTTTGCATTTTGTTTCAAATATGTGAGCATGAAACCTCAATACACTTCCATTTTAATTTGCACTGAAGCAAAATACTGTTAAGCCATTATAATTGTTGTTCTTTTGCACA
>TU535007
GGAACATTCTTCAAAATATCTTCAAATACAATTACATATTTTTTAAAATATCTTTTCATGTGTTCCACAGAATAAAAAAAGTCATACAGGTATAAATGACATAAGGGTGAGTACATGATGACAGAATTTCCATTATTGGCTAAACTATACCTTTAAGGTAACATTTAAATGAAAAAAAAAGAGGAAAAAAGGTCAAAGCACAAAAAAAAAAAAATAAATCAAAATAAATATATAATTACCAAACATTCTCATCTATCAGTGAGCCAAAGTAAAAAAAGAAGAAAAAAAAAAAAAAAACCAATTATTAAATACATCAACGTGTCTGAAACGTTCACTGCATTTTATCATGTATGGCAGGAAGAATGTTTAAGTGCACTATATGTGTGCATGGGGCATGGGAATGTGTTTTCTCTTAGATTTTCTGGGTCTGTTTATTTTGGGTGCAGATTTCTTGGTCTCCACCCTATGTCGGGGCCATTCTGTACAGGACATACATGTGGGGTTTTTTTTTTTTTTTTGACATCTGACAACAGTGTTTCTGAGTAGCTGAAACTTGTTCAACTGGTCTTCAACACAATGTCAAACTTGCACGACAGCCAGCCCAAGCAGCATGAAGCTCCAACTGTCATACACTTAAAATAATTCACGTTGTCAAATCACATATCAATTACAGCAAAATTATGGTAATTAAGATACACATCTGATTAATTCTTCTAATAAATTGTTTCAGGAATTTGAGCAACAGTAAGCTTTAAGAAATTTGTTAGTAATGGCTAAAAAGAAACAAGCAAACAAGTGCGGCAAGTACAACACATGTGCGATTCACATGACCCTCTTTCCATTCTGCATTTGTCATTCATATAAGGTCAGCGGGGGCCTAGTGTGTCCGCGCCTAAGGTTACTGCGCTAGAGAAAGTAAACAGGCTGTCCCGTGAAAGGTCTGGTCACTGGAGCTCCCCCGTCTGCCTGAGCTATAGGCAGAGAAAGGCTTGTGCATCATGCAGACTTTTAAGGAGCTTACATGTGCTTGTATCTTATGATGCCAGCTAATACCTCTATTTATAGATAATCCTATTTTAACCAAAGTAAAGCCTAAGCTATACTACAAGGAAATGTCCAGGGGTGGCAGGGGGCAGAGGGGTGTTTTGTTTATCAACCGAAATTTAACTTTTTACAAGAAAATATGATATTTTCCCTCATCTAATTCTTATGACATTCAATGTTTAATTTACATGGAAATTATTACAAAAAGCCTTGTTGGAAATAAAATAGGTTATTATTAAAATATAGCCTATCCTTTCTGTTGAAATTAGAAAAATACCACCATCCTCATTGTCAAGGAGTGAATATTAGTTAAGTCAGTGTGGTAGTCTAATGGCTTCGACCTAAGACGCAATTCCCAAGCAGGGCTGACAAAGGAACTGTGACGTTACTGAGATCACAAGTCCGTCCTGTCTTAATATTTTAATGATGCTGACTGGTCAAATACCTAAGAATGACTCTGTATTACGCAAAAACATTAATGTACTAATAACACTGAATCATCCACACAGAAAATAGGTTAGTACATAAATATTTGTTTTGCTAAGAACATGACGCAACTCAAAAGACAAACAATATGCTCTCTGAGTACTTTCCGAATTTAAGGTGATGATGACCTTAACTTTATCGTAATTTGTAAATAAAGTGAACGTGTAACGTAAACAACTAGAGATGAACATGTGTGGTTGTCACAGTGGAAACCATCAAGTAAAAAGCATAGGATGTTACAGGTTTGTAGAAAGATTAGAAACGTATGGAAATACATGAATAACAGGTTTCTGCATTCTAATAAAAATGGAAAGATCTGAAATATGTCACGCTATCATAGATAGAGATTACAGACAAAGGAGATCTAAAATACAAGCCGATGCCATAGCTTAAAAGATCTTGAGGAAGAAACTAATCTGCCTCAGCAGTCATGATAGGATAAAACTGAATGGA

Function

symbol description
chac1 Predicted to enable Notch binding activity and gamma-glutamylcyclotransferase activity. Acts upstream of or within with a positive effect on glutathione catabolic process. Predicted to be located in trans-Golgi network. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; periderm; and solid lens vesicle. Orthologous to human CHAC1 (ChaC glutathione specific gamma-glutamylcyclotransferase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K07232 CHAC, chaC; glutathione-specific gamma-glutamylcyclotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_06275779_06276922.mRNA False 2265 mRNA 0.45 3 6274578 6277368
TU535007 True 1983 lncRNA 0.35 1 6272612 6274594

Neighbor

gene id symbol gene type direction distance location
CI01000325_06262523_06270980 DLL4 coding upstream 3062 6262108 ~ 6272168 (+)
CI01000325_06045898_06049007 NA coding upstream 225214 6045898 ~ 6049364 (+)
CI01000325_06007394_06009436 VRTN coding upstream 264164 6007276 ~ 6010414 (+)
CI01000325_05975085_05977148 ZBTB1 coding upstream 297106 5974947 ~ 5977472 (+)
CI01000325_05963237_05964658 NA coding upstream 308448 5963023 ~ 5966130 (+)
CI01000325_06325122_06326464 RHOV coding downstream 47754 6325122 ~ 6327542 (+)
CI01000325_06347413_06355066 ZFYVE1 coding downstream 70045 6347413 ~ 6355322 (+)
CI01000325_06372477_06396130 DPF3 coding downstream 95109 6372477 ~ 6396130 (+)
CI01000325_06583304_06591407 FNTB coding downstream 305936 6583304 ~ 6591733 (+)
CI01000325_06603583_06613761 NA coding downstream 326215 6603583 ~ 6613941 (+)
G466073 NA non-coding upstream 25356 6248631 ~ 6249222 (+)
G466036 NA non-coding upstream 60894 6213476 ~ 6213684 (+)
G466030 NA non-coding upstream 67644 6206711 ~ 6206934 (+)
G466018 NA non-coding upstream 78037 6196323 ~ 6196541 (+)
G465946 NA non-coding downstream 61596 6338964 ~ 6339253 (+)
G466113 NA non-coding downstream 174481 6451849 ~ 6453253 (+)
G466116 NA non-coding downstream 178475 6455843 ~ 6458071 (+)
G466119 NA non-coding downstream 188829 6466197 ~ 6466816 (+)
G466126 NA non-coding downstream 201260 6478628 ~ 6478862 (+)
CI01000325_05655953_05691697 PRIMA1 other upstream 580595 5654840 ~ 5692630 (+)
CI01000325_05549713_05553140 TMEM251 other upstream 720001 5549713 ~ 5554577 (+)
G464950 NA other upstream 1183640 5058456 ~ 5090938 (+)
G463724 NA other upstream 3546128 2728206 ~ 2728450 (+)
G463566 NA other upstream 3710843 2563155 ~ 2563735 (+)
G466144 NA other downstream 221398 6498766 ~ 6501978 (+)
G466137 NA other downstream 339832 6617200 ~ 6619471 (+)
G466236 NA other downstream 726249 7003617 ~ 7004655 (+)
G466227 NA other downstream 1034715 7312083 ~ 7314812 (+)
G466219 NA other downstream 1204668 7482036 ~ 7486407 (+)

Expression


Co-expression Network