CI01000325_06007394_06009436 (VRTN)


Basic Information

Item Value
gene id CI01000325_06007394_06009436
gene name VRTN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 6007276 ~ 6010414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_06007394_06009436.mRNA
CTATAAAAAATGTTTGCACATTTTGGCAACCCCTCAATATATAGATCTGCTAATGCTGATCTTGTTTCTTCCTGTCATCCTGTGTTTTTAATTGTTTTTTTTTTTTTTTTGTGTAGGCATGATTCAGAGGACGGAGGTGGTGCTCTCAGTCTTGGGGGAGCTGCAGGAGGCCACAGAGAGTGTGGGTCTTGATGCCCTCACTGAAGTTGCTGTGGAGGTGGAACAGGCTCTAGCCTCTTTCTCTCTTCCTACGACACTCTGCTCTGAGATCTCCTCATGGCTTGGCATCGACGCGGTAGCTCACAGGCTATACCCAGCAGACGCCCCGGCGGGTTTGCTTCCTCTGGTCTGCAAAGGAGAAGGAAACATGCTGTTTGATGCAGCTAGCGTGCTTCTAGTGGGCTCTACGAGCCTGAGTCTAGAGCTGCAGGTCAGGACTGTGGTGGAGATGCTTCTCTGGAAGCGATACTACCTGTGCGGTATGATCGACTCGAAGGTGATGCTGCAGGCAGTTAGGTTTTCTCTCTGCGCCGAGGAGTCTCAGGACATGCTCAATCTGCCGATTCAGGTGCTGGAGGCCATCTTCGATGCAGACGTCAAGGCCTCCTGCTTCCCCGGCTCGTTTGCAAACATGTGGCACGTGTATGCACTGGCTTCTGTCCTGCAGTGCAACATTTATTCAGTTTATCCCATGTACAATTTAAAGATTCGGCCCTATTTCAATCGACTCATTCGCCCAAGGACATGGGCGAAAGACTCTGAGCCTTTGACCCTTCACATCATGTGGTCGGGCGACCTGGAGGCAGGCTCTGTTTTCAAACCCCACAACTTTGTAGCTTTGATTCATGCGAGCGACCTCAAAATCGGGAGTCCCAACAGCGAGCAGCGAATGCCCACAGTAAAGTCCCTGGAGCTTATGAATCAGGATGCCCAGCTGTCATACTCCAACCTCAAAGACAAGTTCAATATCACCAAGAGCACCTTTTACCGCTGGAAAAGGCAAAGCATCGAATACCACAAGAAATCGGTGGCCAGGTATGAGGCCAAACACTTTTTCCTAACATCCTACAAGCAAGGGAAGCTGATTCCTCTCAGCCAATTTAAAGGGCTTTTCCCAGAAATTCCAAGATCCACGTACTATGCGTGGAAGCAAGAGCTTGTGTCTACTTGCAGCGTCTCAGGTGGCTCCACAGGCGAGCTGAGTCCCAGAGACAGCACTGAACAGGACTACTGGTCCTCACCAGAAGTCAAGAAGCCCAGCCAAGGGAGCTTTGCTAGCATGTTGGCTTTCAAGTGCGAGAAGCTTGAAGGAGAACGGGCCCAAAATGTGGCCTTGATGCAGGAGGCAAAGAAGAGCTTGCAGAACTGTATTGTTGCGAACACCTCGTTCCCCTACAGAATTTTCAAAAGAAGGTTTCCAGGCATCTCCAGATCCACATACTACAACTGGAGGAGGGAAGCCATGCTGTTCACGCCTTTCAAAGAGCTCTCAGGTAGCAGCGAGGAAAGCTCAGATGCTGATAAAACCCAGAGTCCCAGAAGTCAAGTGTCCCCTGCTAAGTTTGACAGACAGAAACTGTCACCAAGGGTGAAGATCTCCAGACGCAAACAAAGAGGCCTGAGGCTGGCATACCACCAGAGGAAAATGTTAAGGGAAGAAGCCAAAATGCACATCCGGAGGTCAAAGATGTCCTTCATTAAATTCAAACTCAAGTTCCCTTCAGTTTCCTCCTCTTTCTATTGGCTCTGGAGAAATTCTTTGAACAGGAATACCAAGAAGCCCATCATGATGTCTGAGACGGTGGAATCCCAGAGCTTGGCTGTCTCGCCAGACGTCTTCGAAAAGATAAAAACTCCAGGAATGTTTTCTTTTGATGGGAACATTGATTGCCTGAATGGACAGACTGTTAGTCCCTCTGAATTCACACTGCCTGAATACTCTTTGCCTGACCAGTCCAGTAATGAACATATGTTTGTGATGGATGTCGTGGCACTGGCCAATTTCAAGGCCCAAGCAAAGCTGTTTTTGCAACAACGCTTTGAAGAGAAGTCCTTTCCCACATTCAAAGAGTTCCGGTCCTACTTTCCTCTTACTCCTCGTTCCACCTACTACATGTGGAAAAGGGCTCTGCATCACGGGGTACCATTAATTCATGGCTGAATGCTGATATTTTCTTCACCACTGTAAAGTCCAGTAATTACATCCAAAACTGGCACTACTAAATTTTATAGTTCACAATGCAATGTTTCTTTGAGTTTGGCTGTTTGTTTTTGTTTTGTTTTTTTGAGTCACCCGCATAATTGCAGTTCATGCATCTTAATTATTTGTCCTTTTCCTTTATTTGACCACTTGGTTCTAGCTCAAGGACATTTGCATGTGTGTGAAATCAGACAGTCTTTGTGTCCACCTACAGTAAGTGCTGATGGCCCCCAGGCAAAAGGCAGTTCAAAGACATTATCAGGTTTTCAGATGGCTCTCTTTTGACTCCCACCCCCCAAATATTTACATTTTAAATTAGTTCTAAGTTCTGATTAGGTTCATTTTATTTTCTTGTCTATTTCTTTTTATTTGTTTTAGGGACTTTTTTTATTATTTTGTTTTTTACTTTTTTTTTTTTTTTTTGTAGTTGAAAGTTACAGTTAAGGATTTTTCTTAAAAATGTATATTATTTTAATTCTTACATTGGAGTGTTCTTTATTTCTTTTTTTTATACATATATATTTTTATACTGACAATTGAATGTGATCTCTGCTTGGGAAAACTTTATGTGGCCAATTTAAAATGGATTCCTCACAATTGAATGTTACAGAATTGTTGCTGTTTTGCACATTGTTTTTGACCATGTTTCAGTTCACACGTTTACTTTTTTCTTGCTGCTAAAGGTGTAAATATTTGACAATCTCTGACTTGATACTGTTGATACTAAGTGTTTTCTGAAGTAATGTTCAACTACCTAGCTGATATTTTTCAGCTTCACATTTATGGTGTTCTGTAACTTTCGGTTAAACTTGACTACGACGTTACATAAGTTCACATTTTGCTCCTTGGATCATTTTGCTGAATTTGATGAGCACACTGCTAATTTTGTTCATTTCATCATGTTGAGCATCTCATGTATGTGACCAGTTGCTCTGTGCA

Function

symbol description
vrtn Enables DNA-binding transcription repressor activity, RNA polymerase II-specific. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in chromatin. Is expressed in several structures, including blastodisc; margin; oocyte; tail bud; and yolk. Orthologous to human VRTN (vertebrae development associated).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_06007394_06009436.mRNA True 3139 mRNA 0.44 1 6007276 6010414

Neighbor

gene id symbol gene type direction distance location
CI01000325_05975085_05977148 ZBTB1 coding upstream 29804 5974947 ~ 5977472 (+)
CI01000325_05963237_05964658 NA coding upstream 41146 5963023 ~ 5966130 (+)
CI01000325_05941338_05958627 NA coding upstream 48275 5941338 ~ 5959001 (+)
CI01000325_05852745_05882303 KIF26AA coding upstream 124595 5852522 ~ 5882681 (+)
CI01000325_05806682_05840917 NA coding upstream 166359 5806682 ~ 5840917 (+)
CI01000325_06045898_06049007 NA coding downstream 35484 6045898 ~ 6049364 (+)
CI01000325_06262523_06270980 DLL4 coding downstream 251694 6262108 ~ 6272168 (+)
CI01000325_06275779_06276922 CHAC1 coding downstream 264164 6272612 ~ 6277368 (+)
CI01000325_06325122_06326464 RHOV coding downstream 314708 6325122 ~ 6327542 (+)
CI01000325_06347413_06355066 ZFYVE1 coding downstream 336999 6347413 ~ 6355322 (+)
G465958 NA non-coding upstream 96586 5910403 ~ 5910690 (+)
G465922 NA non-coding upstream 114694 5892231 ~ 5892582 (+)
G465732 NA non-coding upstream 292871 5663051 ~ 5714405 (+)
G465726 NA non-coding upstream 352942 5654059 ~ 5654334 (+)
G465723 NA non-coding upstream 367625 5639218 ~ 5639651 (+)
G465979 NA non-coding downstream 133593 6144007 ~ 6144156 (+)
G466010 NA non-coding downstream 178166 6188580 ~ 6188819 (+)
G466011 NA non-coding downstream 178809 6189223 ~ 6189915 (+)
G466014 NA non-coding downstream 181695 6192109 ~ 6192391 (+)
G466015 NA non-coding downstream 183004 6193418 ~ 6193776 (+)
CI01000325_05655953_05691697 PRIMA1 other upstream 313293 5654840 ~ 5692630 (+)
CI01000325_05549713_05553140 TMEM251 other upstream 452699 5549713 ~ 5554577 (+)
G464950 NA other upstream 916338 5058456 ~ 5090938 (+)
G463724 NA other upstream 3278826 2728206 ~ 2728450 (+)
G463566 NA other upstream 3443541 2563155 ~ 2563735 (+)
G466144 NA other downstream 488352 6498766 ~ 6501978 (+)
G466137 NA other downstream 606786 6617200 ~ 6619471 (+)
G466236 NA other downstream 993203 7003617 ~ 7004655 (+)
G466227 NA other downstream 1301669 7312083 ~ 7314812 (+)
G466219 NA other downstream 1471622 7482036 ~ 7486407 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017376 vrtn coding NC_007131.7 CM002904.2 27749133 ~ 27755014 (+)