RNA id: CI01000325_06275779_06276922.mRNA


Basic Information

Item Value
RNA id CI01000325_06275779_06276922.mRNA
length 2265
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000325_06275779_06276922
representative False

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 6272612 ~ 6277368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATAAAACTGAATGGAGATGTTTGAAGGATGTTGCAGTTTCTGGTGACAATTTGACTAGACAATCGCATTTAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAATGTTGGGGGAAAAATGGAATCGGTGGACATGCTTAGCAAAATCACCTTCATTTCTCTGTCTACCTATTTATCTATGGCCCGAGCCTCTTACACTCCAGCATCCCGGCGTCCCTACACAGAAAAAGCGATTAAAATTAAGCATATTATATTATTTTATGTTACATTTTTTTGTATTATATAATAGAAATTATTATATTATCTTCCAATGAAGACTTCTTACCAAGTCAAATTTGAAACCTTGATGAAACCTGATTCGGTCTCGAATAACATTCTTGGGAGGCCTGATGCAATACACTCACTACGTACTATGCCTGTTTCTCTGCTTGAAACGCTTGTTTCAAGTTGCATCAGCCGAGCAGACTTTAAGCGACAGATCTGCTGACGAATGAGCGTGAGAGTATTCTGTGACTGACAGCTGGCTCGCCTATGAAATGAAACAACCGCGCACGTTTTTTCCTGGTTCGTGAGCCAATCAGACAGTTATGCCCTTATAGAGACACAGCGAGATGAATTGATTGGATAGAAGTCAAGATGCCCCGCCCTATCTACGCTATGATTGGTCCAGATTTTGAGCAGGGTTAGATACGCCCATAGACATCGTCGCATATAGTCTGCCTCAAAGCAGCCCACATTTCATCAGCCGCCGAGGAGGAAAAGTAGCACGGCAGCCTAGGGTGCTTGAAAGCAACGGTTAAAAGTCTATTTCTTCTGACTTTATAGTGACGTGTGATTGGCTGGGTAGAGGTTTGTTGGTAAACAGGAGGCTGGCTGGTGAGCTAGCAACGGTTTTTGTGTTTTATTCAAATTGAAAGAGCCGAAGAGGCCGAGATGGAATTTTAAGGCAATAATGCGGTAACTGCACGGCATCGGCATGCACCAGGCACAGAAAAGCGATTTGCGGGACTGGACCATCACAACTGCTAAGCAGTTGGGCTCTAATACCGTCCGCGGTATAGCCGTGAGCCAACCGATACCTCTCCTACTCGACAGGAGGAAGCTAACGCTAGCTAGTTAGCCTGTGGGCCCATTCATTTAGCTGTTACATCAAAGCGTAAGTTACACTACTACCCTTCCTATCCTCATACCATCCTGTAAAGATGAAGCCTCAAGACATCGTCGCTGGAAAATCCAGTCTGTGGATCTTCGGTTACGGCTCGTTGGTTTGGAAACCTGACTTCAAGTACAAGAGGAGCAAGGTCGGTTACATTAAGGGGTACAAGAGACGCTTCTGGCACGGGGATAATTTTCATCGTGGAGATGATGAAATGCCCGGAAGAGTGGTGACGCTCATCGAGGAGGATGACGCGTGCACCTGGGGTGTTGCCTTCGAGGTGACTGGCTCTCAGGTCGAAGAGTCTCTCAAGTACCTGAACGTGAGGGAGGCGGTGAGAGGCGGCTACCTGACCCAGGCCGTAGATTTCTTCCCGCAGGGCGTGAATCAGTCACCTGTCCAGGCTCTGGTTTACATCGCCACAGCTGACAACCCTATTTACCTGGGGCCTGCAAGCACGGAGGAAATCGCCGCTCAGATCGCTGTGTGCAAGGGGAAGTCGGGCCACAACATCGAGTACCTGCTTCGCCTGGCGGAGTTCATGAGAGTCAGCTGCCCTGATGTGGACGACCCTCATCTGTTCTCTATCGAGGCAGCTGTTCTTGCAATCATTAGACCCATATTGTTAGCATCCCAGAAACCTGTATCTTCTGTAAAACATTAAATGTTACTGAGGCTATCAGCATCTAGTCCAAACACCATTAAGGTCCTAACGTAAAGTTAATGTTGCTGTCCTTGAGGTGTGAATGTGATTTAGTGTCTGTTCTCAAATATTTTATTTTCTCTATACGAAGCGATTTAAAAGTTACTCCACTAAGGTAAAGATACTGCATTAAGGGAACATGGTGGTTTAGGTTGTTGTTTTGATGCTATGGCATGACATCATGCATACTGTCAGTTTTCGTCATGTGCTCTTTACTCAAGTATGTGGTGCTGTGGTACAAATGCATGCTTGTGTGACAATGTATTGCCAAAGTTTGTCGAGTTCTAACTGTCAAGTGTTTGCATTTTGTTTCAAATATGTGAGCATGAAACCTCAATACACTTCCATTTTAATTTGCACTGAAGCAAAATACTGTTAAGCCATTATAATTGTTGTTCTTTTGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU535008 lncRNA upstream 2410 6271509 ~ 6272168 (+) True CI01000325_06262523_06270980
TU534998 lncRNA upstream 25356 6248631 ~ 6249222 (+) True G466073
TU534960 lncRNA upstream 60894 6213476 ~ 6213684 (+) True G466036
TU534954 lncRNA upstream 67644 6206711 ~ 6206934 (+) True G466030
TU534942 lncRNA upstream 78037 6196323 ~ 6196541 (+) True G466018
TU534846 lncRNA downstream 61596 6338964 ~ 6339253 (+) True G465946
TU535050 lncRNA downstream 174481 6451849 ~ 6453253 (+) True G466113
TU535061 lncRNA downstream 178475 6455843 ~ 6458071 (+) True G466116
TU535064 lncRNA downstream 188829 6466197 ~ 6466816 (+) True G466119
TU535071 lncRNA downstream 201260 6478628 ~ 6478862 (+) True G466126
CI01000325_06262523_06270980.mRNA mRNA upstream 3062 6262108 ~ 6271516 (+) False CI01000325_06262523_06270980
CI01000325_06045898_06049007.mRNA mRNA upstream 225214 6045898 ~ 6049364 (+) True CI01000325_06045898_06049007
CI01000325_06007394_06009436.mRNA mRNA upstream 264164 6007276 ~ 6010414 (+) True CI01000325_06007394_06009436
CI01000325_05975085_05977148.mRNA mRNA upstream 297106 5974947 ~ 5977472 (+) True CI01000325_05975085_05977148
CI01000325_05963237_05964658.mRNA mRNA upstream 308448 5963023 ~ 5966130 (+) True CI01000325_05963237_05964658
CI01000325_06325122_06326464.mRNA mRNA downstream 47754 6325122 ~ 6327542 (+) True CI01000325_06325122_06326464
CI01000325_06347413_06355066.mRNA mRNA downstream 70045 6347413 ~ 6355322 (+) True CI01000325_06347413_06355066
CI01000325_06372477_06396130.mRNA mRNA downstream 95109 6372477 ~ 6396130 (+) True CI01000325_06372477_06396130
CI01000325_06583304_06591407.mRNA mRNA downstream 305936 6583304 ~ 6591733 (+) True CI01000325_06583304_06591407
CI01000325_06603583_06613761.mRNA mRNA downstream 326215 6603583 ~ 6613941 (+) True CI01000325_06603583_06613761
TU534591 other upstream 580595 5692780 ~ 5693983 (+) True G465727
TU533890 other upstream 720001 5552120 ~ 5554577 (+) True CI01000325_05549713_05553140
TU533681 other upstream 1183640 5058456 ~ 5090938 (+) True G464950
TU532320 other upstream 3546128 2728206 ~ 2728450 (+) True G463724
TU532139 other upstream 3710843 2563155 ~ 2563735 (+) True G463566
TU535096 other downstream 221398 6498766 ~ 6501978 (+) True G466144
TU535088 other downstream 339832 6617200 ~ 6619471 (+) False G466137
TU535089 other downstream 339832 6617200 ~ 6619471 (+) True G466137
TU535202 other downstream 726249 7003617 ~ 7004655 (+) True G466236
TU535193 other downstream 1034715 7312083 ~ 7314812 (+) True G466227

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034571 False 1562 mRNA 0.47 3 NC_007131.7 28266892 ~ 28269462 (+)