XLOC_017375


Basic Information

Item Value
gene id XLOC_017375
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27735811 ~ 27739819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036600
GAAAAATGCATGTGTTCTTGTGCCCATTTCTTGGATTGCTGTTCTGCTTTGTTTATGCAGatATGGAGCTTGATGAAATTACAGCAgGTGCTAAGTTGCCTGTAGAAATCGGAAAGCCTGTCAGTTTGCCTTGCCTTAATAAGGTGGAACAGAATTCTTGCAGTAAAGTGACATGGCTGTCTAATGAGAGTCCTACTGTTGAACTTGTCAGTCTTGGCATACGCAAATCAGAGCGGTTAGATAGAAAAAACAGAGTGAGTCTGTTGACCGACTGCGCTCTACACTTCAGTCAAGTCAAGCCCCAAAATCTTGGATGCTTCACCTGTCGACAGTTTTCAGGTTTGGGTGGAGAACAAATTAAAGAGGATTCCAGAatttgcttgtttattaaaaaagACGCTACTGCTaccactgctactactactaccactactactactgctactactacacAAAGCTATGGTAATTTGCTCAAGCTTTTAGATTAAATAGAATTTTTACTTTGAAAGTGAAATATATTTCTGCTATAGTGTACTTTTTGCTATTGTAACTGATTATACCCACTCTATAAAGCTGTTCCCACTTTTATGTCAAACTGTTGATTCTAGAATTTCTAAACATTAATAGATCAtattattgtaaatgttttaGCAAAATGCAACCCACGTCCTCCCAAACATTTCcccctaatattattattaggttTCCCCCCCATTTTTTTCCAGATACAACTTCTATGGACAATATTGTTAGTTTATCAGACAGCGCAGAAGACAAATCATTCATTATAATCCCAATAGTGCTAGTGGTTGGTGCTTTTTCATTGGCTGCACTTATTATCACCTGGCTCAGATATCACAAGAAAGCACAAAtgacagcatcaaatgaaaaacaacacACACTGAATCCTGAAACTGAAACTACTACAAACAAATTCCACAAAGGTGAAGATGTGGTGACTTACATTGAATTGAACTACAATGTACTGAAACCAAGTAAAGAAGACATAAACAACCAATATCAAAAAACTGAATATGCAGTGATAAAAATGTCCTAATTGTCTGTGATAAATAAACCTGAATTGTACAAAAGAAAAATGTGTTGCTTTTATGGAGAAAATGAGTGGTGTGTAGAAGATAATTTCTCATTAGAGTATGAAGATTCCATGAGGTCATTGTCAgtgtttttaattctttattgaAATATTCAAAATCC
>TCONS_00036386
tattttaCAGAATCATTCATTATAATCCCAATAGTGCTAGTGGTTGGTGCTTTTTCATTGGCTGCACTTATTATCACCTGGCTCAGATATCACAAGAAAGCACAAAtgacagcatcaaatgaaaaacaacacACACTGAATCCTGAAACTGAAACTACTACAAACAAATTCCACAAAGGTGAAGATGTGGTGACTTACATTGAATTGAACTACAATGTACTGAAACCAAGTAAAGAAGACATAAACAACCAATATCAAAAAACTGAATATGCAGTGATAAAAATGTCCTAATTGTCTGTGATAAATAAACCTGAATTGTACAAAAGAAAAATGTGTTGCTTTTATGGAGAAAATGAGTGGTGTGTAGAAGATAATTTCTCATTAGAGTATGAAGATTCCATGAGGTCATTGTCAgtgtttttaattctttattgaAATATTCAAAATCCTTTAATTTCATGAATTTTTATAAACGTTCATGTAAAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036600 False 1215 lncRNA 0.36 7 27735811 27739780
TCONS_00036386 True 488 lncRNA 0.31 3 27738527 27739819

Neighbor

gene id symbol gene type direction distance location
XLOC_017374 zbtb1 coding upstream 15713 27712714 ~ 27720098 (+)
XLOC_017373 si:dkey-1h6.8 coding upstream 41944 27691307 ~ 27693867 (+)
XLOC_017372 mthfd1a coding upstream 48354 27646772 ~ 27687457 (+)
XLOC_017371 NA coding upstream 145647 27579744 ~ 27590164 (+)
XLOC_017370 kif26aa coding upstream 182926 27426507 ~ 27552885 (+)
XLOC_017376 vrtn coding downstream 9314 27749133 ~ 27755014 (+)
XLOC_017377 BX255917.1 coding downstream 15652 27755471 ~ 27781482 (+)
XLOC_017378 BX255897.1 coding downstream 164426 27904245 ~ 27933000 (+)
XLOC_017379 NA coding downstream 165278 27905097 ~ 28001046 (+)
XLOC_017380 NA coding downstream 372578 28112397 ~ 28129487 (+)
XLOC_017369 BX255913.2 non-coding upstream 317995 27416520 ~ 27417816 (+)
XLOC_017368 dre-mir-203b non-coding upstream 329849 27405878 ~ 27405962 (+)
XLOC_017365 NA non-coding upstream 363361 27297144 ~ 27372450 (+)
XLOC_017384 NA non-coding downstream 660051 28399870 ~ 28401312 (+)
XLOC_017366 BX255913.3 non-coding upstream 397690 27338006 ~ 27338121 (+)

Expression


Co-expression Network