XLOC_017378 (BX255897.1)


Basic Information

Item Value
gene id XLOC_017378
gene name BX255897.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27904245 ~ 27933000 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034567
ATGCTGCGCCCCAATTTGCTTACTTATACTgcaccctaaaagtatgtactttttttatgAAGGAAAAATTTATACTTttaagtgtgtaacagaagagtatgcaagctttgggacatactactaactcattaacagatcgttgtgttgcttagttatgagccctgtcaGTCATCCACACATcctccacatttctATGTTAATatccaaacacgtctttatataagttcagtattgttgttgcagatgaaatgcAATTTTAcacgatttaaatattttccagtgggctattcattaacagtcattcaaacatctttacccAGCCTGTCTACTTGATGTTTGGTCTCATGCGTCCATCATGTttatagtttatttacactttttacccgCATTTGTAATTCTAATAAAGTTCATGTCCAacatgcaatgtattgtattctagaaacatccttgcaggtgtgttgaagcaagttgaagttaaaatctgcaggacatcggcccttcaggaccgagtttgcgaATTGACAAATTATAATATATGTGGTACCAATGAATCATCAAGTCAATTATGGGAGTGCTTTGTTAAATAGTTCTGAGGCTTAACGAGAGATGTATAGAAGATGTATATTATTAGATGTATATCAAcgattacaaaaaaattaagtaatggtTTTGGACTAGCTCTGCAAATAGAGGTACTGTAAACTGTATTGTTTATCCTTGGTttcaatcaaactaaatctgCCAAATAAGAATAGACCCTTAAATAGGAAGGCTTGAATtaaagacaaataaacaaatcaaaaagtTGACATGATGTCATAGGATGTGACAATAAAAAGAGAAGATGCTTAGTTTTTCTCTTTATCACTGCAGTGTTGCTCATTACAGTTTAATACAGATCTTTAAGAGGTTGCATTTTTGTGTCTTAATGTGAGGTGAAtgtgttacccactgcaccacagataaagaaggttgctggttcaagccccggctgggtcagttggcatttttgtgtggagtttgcatattctccccgtgttcacgtgggtttcctctgggtgctccagtttcccccacagtccaaagacatgtggtacaggcgaatttagtaggctaaattgtccgtagtgtacgagtgtgaataagtgtgtatagatgtttcccagaggtgggttgcagctggaagggcatccgctgcgtaaacatatgctggataagtttgcgg

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022843 voltage-gated cation channel activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096732

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034567 True 1225 lncRNA 0.38 5 27904245 27933000

Neighbor

gene id symbol gene type direction distance location
XLOC_017377 BX255917.1 coding upstream 122763 27755471 ~ 27781482 (+)
XLOC_017376 vrtn coding upstream 149231 27749133 ~ 27755014 (+)
XLOC_017375 NA coding upstream 164426 27735811 ~ 27739819 (+)
XLOC_017374 zbtb1 coding upstream 184147 27712714 ~ 27720098 (+)
XLOC_017373 si:dkey-1h6.8 coding upstream 210378 27691307 ~ 27693867 (+)
XLOC_017380 NA coding downstream 179397 28112397 ~ 28129487 (+)
XLOC_017381 dll4 coding downstream 312164 28245164 ~ 28257992 (+)
XLOC_017382 chac1 coding downstream 333892 28266892 ~ 28269462 (+)
XLOC_017383 rhov coding downstream 431742 28364742 ~ 28368137 (+)
XLOC_017384 NA coding downstream 466870 28399870 ~ 28401312 (+)
XLOC_017371 NA non-coding upstream 314081 27579744 ~ 27590164 (+)
XLOC_017369 BX255913.2 non-coding upstream 486429 27416520 ~ 27417816 (+)
XLOC_017368 dre-mir-203b non-coding upstream 498283 27405878 ~ 27405962 (+)
XLOC_017387 BX255881.1 non-coding downstream 545203 28478203 ~ 28478318 (+)
XLOC_017388 BX569801.2 non-coding downstream 708979 28641979 ~ 28646065 (+)
XLOC_017389 BX901928.1 non-coding downstream 775907 28708907 ~ 28709023 (+)

Expression


Co-expression Network