XLOC_017384


Basic Information

Item Value
gene id XLOC_017384
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28399870 ~ 28401312 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036604
TTCGTTTCAATATTTGGCACATATGTCCCCCTAGTGGTCACTTAACGTCAGAAGGAAATAACTTAGAActtattattaaacatatatgACACTAAACAGAAAAATACTCATTTCTATAAAGTAAACTATAATCTTATTTCTCTGAGatgctaaataaacattacagGACTACATGCTATAAGAAAAAACTATTTCTGTTTTCTGCTAAAACTTATTCCTGTTCTTAAAACTTACACGTAATTTAGTTCTACACTAAATGATTCAGTGCATAAATCTAAAAATTGGTTGGAGTGTCATTTTACAGAGGCATTTTAAAGGGAATGAAAACActtagggtgtgttcacacttattGTAGAGCTCTGTTCTGTTCTTTTGGTGCAGAGCAAAAAATTTATTACACACGTGGTCCCGTTTCACTATGGGTTCAGAATATGAACATAATTCATCAATCAATCCTTTTAATGGTCACATCTTGTGTTTTTGGGAATGCACCAAGATTTATCTGGTTGATCCACTTGctgggatgcacaatatatcatttcagcattaatatcgcaatgtgtaCATTTGCAATTGTCTCATCGCAGGATCTACAATGTTGAGTCTGTATTATGGTTGACCAGCACCCCGAATTTTATTGTTTAATCATAAgaaatttattgtttattatttccaGGTGTTTTTAAGGCATTTCTAAAAAAGGGTTTTAAACAGGGTTTCTTCAAGTCaaacttaagactttttaagaccctttcaAAAGCATATGAGTGAAATTTTAGACTGATACAGCTCTAAACACTAAGAATTTTGAATGGCCcggttacttctgtaaatagtttttgtattaatggaagatcatgtaaaagGATgcgttgctttagttttctttccctgattagggaatttaattagctgtaaaaatgtctaacagcttaTGTGACATgtatctttttaaataataaaaataataacaataaaaaaaactaaatataaaccaAAAAATTAAGACTGATTATTGGTGATTGGGTGTCAGCCCGATAGGGTAGCTTTAAATGGAAATAGTAAAATAAGACCTgtgtaaaatgatttaagactCGCAGCACAATATTGCAGTGAATTTCAAacttaaggcctaaaattttcttttttgaaacttA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036604 True 1158 lncRNA 0.31 2 28399870 28401312

Neighbor

gene id symbol gene type direction distance location
XLOC_017383 rhov coding upstream 31733 28364742 ~ 28368137 (+)
XLOC_017382 chac1 coding upstream 130408 28266892 ~ 28269462 (+)
XLOC_017381 dll4 coding upstream 141878 28245164 ~ 28257992 (+)
XLOC_017380 NA coding upstream 270383 28112397 ~ 28129487 (+)
XLOC_017379 NA coding upstream 398824 27905097 ~ 28001046 (+)
XLOC_017385 zfyve1 coding downstream 6408 28407720 ~ 28418719 (+)
XLOC_017386 dpf3 coding downstream 32884 28434196 ~ 28501429 (+)
XLOC_017387 BX255881.1 coding downstream 76891 28478203 ~ 28478318 (+)
XLOC_017388 BX569801.2 coding downstream 240667 28641979 ~ 28646065 (+)
XLOC_017389 BX901928.1 coding downstream 307595 28708907 ~ 28709023 (+)
XLOC_017378 BX255897.1 non-coding upstream 466870 27904245 ~ 27933000 (+)
XLOC_017377 BX255917.1 non-coding upstream 618388 27755471 ~ 27781482 (+)
XLOC_017375 NA non-coding upstream 660051 27735811 ~ 27739819 (+)
XLOC_017391 AL928866.1 non-coding downstream 448921 28850233 ~ 28852283 (+)
XLOC_017395 AL928866.2 non-coding downstream 594545 28995857 ~ 29012542 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G126728 NA non-coding NC_053123.1 CM020920.1 24287034 ~ 24287603 (-)