RNA id: TCONS_00036612


Basic Information

Item Value
RNA id TCONS_00036612
length 1385
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_017412
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30387024 ~ 30431438 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcATTACAGCACATCTGGTCTGTGCTCTCTTCAAAAATCATGTCACAGCTGACTCGGGCCCTCAAATCTGGAAGGAAGTGTAGGGGAATTTCCACTAATGAATCCAACAATCACACGATGAGGCCTCTTTGTGCAGGGACTTCAATGGAAGCCACATTCGGAGCAGGCACAGCGAGTCACAATCAAAGGCACCGGCAAGCCGTTACCACAGGAGCAAAGCTGCAGCTTGTAACCGAACAGACATCTGTTTCTATGACAGCTGTCTGGAGCGGCATCAGCCTAACTAACTGCTGCCTCAGAACTAGTCTGACTGTTTGATATCTCCTGCGATAAAGACAGAGAAGATTCTGTCACAAACCCTCGCCGCTTCTTGTTGTGATGCAGTAATGTGAAGAGGGAAGTTTgcgtttgtgtttattttgttcctCTTTGAAGCTCCTGGAATCAGAGGCTGCAAAATAGTGGAGGGGAGAAGAAACACCCGAGAGAAGTAAACATATGGAGCAAACTAACCCCGGCGAGGATAGTTCTGCATGCTTCAGACGCCCACCTGGTGGTCTGCTGTTTGGAAGGGCAAGACCTGCCCGCAGAGAGAGGGGCTTGACAAGCAGAGCGCAGTGTTATCCAACACGAGCTGGGCTTTGCTGCAGGCGGCTCCGTCCCAAACCTCAGCCCTATCTTGAGCGAACATCACACAGCCGAGATGAAAAAGAGGGAAATCGATGCAGGGGAGAGCGCGCCGTGTAGAGAGCCTGGCTTCGCTTTGATCGAAGGTTGACTGACAAGACCTTCAGCCCTGTGATCTCCAGCATGATGAAGGACCGGAGCTGCGGTGGCACAACAACGTGTGTTTGTTGGCTTTTagggtttgtgtgtttgtgtttcttttatttatatatttactacaAAACCTAGCGAGCGACCTACGGAGGCGGTATTTTAAAACTTCATAGGCGCTCTCCTGACACAAAGTCTTTTTCAAAAGGTCATTGTAATTATGCTGCCGCCCAAGATACCTTCTTTTGGCCAATTTTTACAACGGAATCACTGAATAATGTGCAATGAGTACAAAATATGGAATTGCTAttgttaaaggcatagttcatccaATAATGTTAATTCTCTGTCCGTTTACCCTTGGGTAAAACCCATTGAAGATTTAGTTCATCGGTAAAACATGAAAGTAGAGTTAGCTGAAACTCTGGTCCTTCGTGAATAATTATATGCAAGTTAATGGCTTCCggcattttcaaacaaaattaaTTCCCTTGGTTCCTGACAATACTTTCAGGTCAAAAGTGAAGTGAAACAATCAATCTTTGAAAGAATTTGAACATTCCTTACAACGTTATTACCTTTAATCTGCAGCCTCGGCTAACAATCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036610 lncRNA upstream 208809 30167134 ~ 30178215 (+) False XLOC_017410
TCONS_00036611 lncRNA upstream 208809 30167242 ~ 30178215 (+) True XLOC_017410
TCONS_00034610 lncRNA upstream 302738 30031578 ~ 30084286 (+) False XLOC_017409
TCONS_00036609 lncRNA upstream 302738 30059759 ~ 30084286 (+) True XLOC_017409
TCONS_00036608 lncRNA upstream 644977 29691126 ~ 29742047 (+) True XLOC_017407
TCONS_00034618 lncRNA downstream 147529 30578967 ~ 30583267 (+) False XLOC_017414
TCONS_00034626 lncRNA downstream 471100 30902538 ~ 30906716 (+) True XLOC_017418
TCONS_00036388 lncRNA downstream 543596 30975034 ~ 30977959 (+) False XLOC_017420
TCONS_00036390 lncRNA downstream 543596 30975034 ~ 30978006 (+) False XLOC_017420
TCONS_00036389 lncRNA downstream 543596 30975034 ~ 30978006 (+) False XLOC_017420
TCONS_00034613 mRNA upstream 1454 30378877 ~ 30385570 (+) False XLOC_017411
TCONS_00034612 mRNA upstream 1455 30378858 ~ 30385569 (+) False XLOC_017411
TCONS_00034611 mRNA upstream 3124 30378803 ~ 30383900 (+) False XLOC_017411
TCONS_00034608 mRNA upstream 603380 29743904 ~ 29783644 (+) False XLOC_017408
TCONS_00034609 mRNA upstream 635782 29743936 ~ 29751242 (+) True XLOC_017408
TCONS_00034615 mRNA downstream 14533 30445971 ~ 30574029 (+) False XLOC_017413
TCONS_00034616 mRNA downstream 59244 30490682 ~ 30574014 (+) True XLOC_017413
TCONS_00034617 mRNA downstream 146725 30578163 ~ 30610089 (+) False XLOC_017414
TCONS_00034619 mRNA downstream 147529 30578967 ~ 30610170 (+) False XLOC_017414
TCONS_00034621 mRNA downstream 165107 30596545 ~ 30610143 (+) True XLOC_017414
TCONS_00034614 other upstream 1705 30381098 ~ 30385319 (+) True XLOC_017411
TCONS_00034579 other upstream 1678001 28708907 ~ 28709023 (+) True XLOC_017389
TCONS_00034577 other upstream 1908706 28478203 ~ 28478318 (+) True XLOC_017387
TCONS_00034573 other upstream 2020256 28364742 ~ 28366768 (+) False XLOC_017383
TCONS_00034549 other upstream 2981062 27405878 ~ 27405962 (+) True XLOC_017368
TCONS_00034620 other downstream 147575 30579013 ~ 30579691 (+) False XLOC_017414
TCONS_00034627 other downstream 506496 30937934 ~ 30943094 (+) False XLOC_017419
TCONS_00034628 other downstream 506724 30938162 ~ 30947545 (+) False XLOC_017419
TCONS_00034629 other downstream 507729 30939167 ~ 30947389 (+) False XLOC_017419
TCONS_00034636 other downstream 786101 31217539 ~ 31223027 (+) True XLOC_017422

Expression Profile

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