XLOC_017408 (kidins220b)


Basic Information

Item Value
gene id XLOC_017408
gene name kidins220b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29743904 ~ 29783644 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034608
AGTGCTTCGCTTCTTCAAAATGGCTGTGGCTGAAGATGGTGAATAGGAAAACAGAAGCGCCGTCGACCGACAGAAAAACACCTTTCTAACCGGACATTGATCAGACTTCAGGATATTTTAGCGTTTCTTTTCAGTGAGGGCGTCTGAGTGAGTGGCAATCATGGACACCACAACCTCCATCAAGATGACCACTCTGGCCATCCAGAACCTCTTCAGCTATGTGGAGGAAGAGAATCTGGCTGCGGTCAAAGTCCACCTTGACAAGTTCAAAGAAGTGGACGGTCGAAGCGATAACGGACAGACTCCTCTGATGCTGGCCTCGGAGCAGGGCAGTCTTGAAATTGTTCAAGAACTCATCCGAAGGGGTGCCAACGTCAATTTGGATGATGTGGACTGCTGGTCTGCTCTGATCTCTGCAGCAAAGGAGGGGCACGTGGAGGTGGTCAAAGAGCTGCTTGAAAACAGTGCTTACATTGAGCACAGAGACATGGGGGGTTGGACTGCTCTTACATGGGCTTCATATAAAGGTAGAGTTGAGGTGGCCACGGTCCTGCTGGAGAATGGGGCAAACCCAAACACCACTGGCCAGCAATACAGCGTCTACCCCATAATTTGGGCAGCCGGTAGAGGCCATGCAGAGATTGTCAAACTCTTGCTGGAGCATGGAGCTAAAGTCAACTGCTCTGATAAGTACGGCACCACCCCATTGATCTGGGCTGCTAGAAAAGGCCACTATGACTGCGTGATGCACCTTTTGGAGAACGGAGCCGATGTTGACCAGGAGGGGGCGAACTCCATGACAGCACTGATCGTGGCTGTGAAAGGAGGATATACAGAGGTGGTTAAAGAGCTTCTGAAGAGGAACCCCAATGTAAACATGACTGATAAGGACGGAAACACAGCTCTGATGATCGCCGCTAAAGAGGGCTACACTGAGATCGTGCAGGACCTGCTTGATGCCGGCACATATGTCAACATCCCAGACAGGAGTGGAGACACTGTGCTGATTGGAGCTGTAAGAGGTGGGCATGTTGAGATTGTGAGGGCACTGCTGCATAAGTATGCAGACATCGACATTAGAGGCCAGGAAAATAAGACTGCACTCTATTGGGCAGTAGAGAAAGGCAATGCAACCATGGTTAGAGACATACTGCAGTGCAGTCCGGACACAGAGACCACCACTAAGGATTCTGAGACCCCACTAATCAAAGCCACCAAGATGAGGAGCATAGAAGTAGTGGAGCTGCTGCTGGACAAAGGGGCCAAAGTCTCTGCAGTGGACAAGAGAGGAGACACTCCTCTTCATATTGCGATCCGTGGACGAAGCCGCAGACTGGCTGAGCTTCTTCTCCGTAACCCTAAAGATGGCCGCCTGCTCTATCGTCCAAACAAGGCAGGAGAGACACCCTACAACATCGACTGCAGCCACCAGAAGAGCATCCTCACCCAGATTTTTGGAGCCCGACATCTGTCCCCAACAGAGTCAGATGGGGACATGCTGGGCTACGACCTGTACAGCAGTGCTCTGGCAGACATCCTGAGTGAGCCCACCATGCAGCCGCCCATCTGTGTGGGTCTGTACGCCCAGTGGGGCAGCGGCAAGTCCTTCCTGCTCAAGAAACTCGAGGATGAGATGAAGACATTTGCAGGTCAGCAGGTGGAGCCTTTGTTCCAGTTTTCATGGCTGGTTGTGTTATTATCGCTCCTGCTGTGCGGCTCCGTTGCGCTAGTGCTCGGCTTCACCGTGGACCCCAAGCTTGCTATCGCCATCTCTCTCAGCATCCTAGCACTGCTTTATGTGTTCTTTGTGGTTGTGTACTTTGGGAGCAGACGTGAGGGTGAAAGCTGGAATTGGGCGTGGGTCATTAGCACCCGTCTTGCCCGACACATTGGATACTTGGAGCTTCTGCTCAAACTCATGTTCGTCAACCCTCCAGAGCTTCCAGAACAGACCACCCGAGCTCTGCCGGTCAGGTTTCTGTTCACTGATTATAACAGGCTGTCCAGTGTGGGTGGAGAGACATCCATGGCTGAAATGATCGCCACTCTCTCGGATGCCTGTGAGAGAGAGTTCGGCTTCTTGGCCACCAGACTTTTCAGAGTCTTTAAAACTGAGGACACTCAAGGTAAAAAGAAGTGGAAGAAGACCTGCTGCATCCCATCCTTTGTAATCTTCCTCTTCATCCTGGGCTGCTTGATCATGGGTATGGCCCTGCTGGCAGTTTTCAAGGTGGATGGGCAAAACCAGACTGTGAACGCAGTGCTGGTCTCCATGGCGAGTGTTGTTGGGTTGGCGCTGTTGCTCAACTGTCGCACCTGGTGGCAGGTGACCGACTCTGTGCTGAACTCCCAGAGGAAGAGGCTGCACAGCGCCGCCAACAAGATGCACAAACTCAAGAGTGAGGGCTTTATGAAGGTCTTGAAAAATGAAGTGGAGCTCATGGCTAAAATGGCAAAGACTATCGACGGCTTCACCCAGAACCAAACACGTTTAGTTGTGATCATTGATGGTCTGGATTCTTGCGAACAGGACAAAGTGCTACAGATGCTAGACACGGTGAGAGTGTTGTTCTCCAAGGGTCCCTTCATCTCGATCTTCGCCAGTGATCCTCACATCATCATCAAAGCCATAAACCAGAATCTAAACAGTGTCTTGCGTGACTCTAACATCAACGGCCATGACTACATGCGCAACATCGTCCACTTGCCTGTCTTCCTCAACAGCCGCGGCCTCAGCAGTGCAAAAAAGATGTGTGCACCAGCTCCTGCCAATGGAGAGACCGGCAACTCTGAGGGTTGGCATGAAGAGCTGGACAGAAAGTTGTCCCAGAACAGCCTGGGTGACCAGACCAAGTTTGGCAGTAAGACAACTCTAAACCGCAGGGATACGTATCGCCGTCGACAGATGCAGAGGTCAGTCACGCGTCAGATGTCCTTTGACCTCACCAAACTGCTCGTCACCGAGGACTGGTTCAGTGACATCAGCCCTCAGACTATGAGGAGGCTGCTCAACATCGTGTCTGTCACAGGTCGCTTGCTGAGGGCTAATCAAATCAGTTTTAACTGGGACCGGCTCGCATCTTGGATCAACCTGACTGAGCAGTGGCCGTATCGCACCTCCTGGCTCATACTCTACCTAGAAGAGACCGATGGCATCCCAGATCAGACCAATCTCAAAACCATCTACGAAAGGATCTCCAAGAATATTCCGACCACTAAAGATGTGGAGCCTTTGCTGGAGATCGATGGGGATGTTCGTAGCTTTGAGGTTTTCCTTTCGTCACGTACTCCGGTGCTTGCTGCCCGTGACATCCGAACTTTCCTCCCGTGCACCGTTAATTTAGATCCCAAACTCAGAGAAATCATTGCAGATGTGCGTGCTGCCCGGGAACAGGTAAATATGGCTGGTGTCACCTATCCCACACTGCCTCTGCAGGAGGGCCGTCCCATATCAATGTACAGCCAGCAGTCCTCGGCCTGCTCCCCGACTGCCTCTTTCAACGGCCCGTATAATCCGCCAGGAGTCTCTCCTCAGCCCCACAGCGCATACTTCAGCGGCATGGCTGGACCACAACACCCCTTCTACAATAGGGGCTCAGCTTCGGTGGTCTCAGGCACGCCATCAATTCTGCTCAGCTCGATGAGCACAGATGTCATCTGTGAGCGTGTCAAACTTATCGACGGTATCGATCAGAACCTGATTTCTCAGTATACAGCCACCATTAAGAAGgctaaCATAAATGGCCGAGTTCTGTCTCAGTGCAACATTGATGAGCTGAAGAAAGAGATGAACATGAATTTTGGAGATTGGCAACTTTTCAGGACATCAGTGCTGGAGATGCGTCATGTGGAGAACCAGGTCCTGCATGAGGAGGCACCTAGTGAGCAGGGCAGCATTACGGTTGGCCATGTGGAGCCTTGCAGACATGCTGGAGCAGCCGCTCAAGGAGTAGCTGGAAACACGGACACCTCACCCATGTACAATTTTAACCTCAGCTTTGAAGAGCTCAGTAACGTGGGTTTAGAGGAGCCTCCTAGACATGTCAATGCTACATGGATGGGTACTACTCACCGTACACCAAGCATGTCAAGTCTTAACTCTCAAGAGTCCTCCAATGAAATTTGCAAGCTAACAGACAAGCAGCAGGCAGAGTACCGCAATGCCTATGAAGATTATATCGCCTCCATGTCTCAGCTTGAGTTAGGAATGGAAAAACCGGTGCCACCTTTTGTTAGCCAGCTAATGCACTCCAGCTCTGAGGACAAGAAGAAGGATGGAAATGACCAGGATGGGCGCAAATCTGTTTCCAAACGAGGGAGCACCAAGTCTGGAAGCGATAACACAGATTACGCCTCAGCAGATGCTGCTACTTTAGATCCCATAACAGAAGAGGATGAGAAGGTTGACCATGGGTCATCAAAGTCCCTTTTGGGACGCAAAACATCTGGAGACAAGGTGAGCCTCTTTCAGGGAGCTGATCTGAAGTTGAAGGCTGGTGGAGGCTCACGTTACCAGAAACTGACCAGTGATGATGAAGAATCCGAAGAGTCTGATAATGCCCCTCTGCTTAAAGATGGAAAGAAACCTGAAGCCAAAGCCTCAGATGGCGGAGATCGATCTTTGACCAAAGGTAAAGATTACCTTTCGGATAAGAAGGATTCCTCTGACTCTGGTGTCCGCTCCAACGAAAGCTCACCTAACCATTCGCTACAAGACGAAGAGGCTGATCTGTCACAATCAGAGAGGGCTAACCTGATCGAGCTGGACGAGGAGAACTCGGCCCGAAAGCGAGGCCTGCCGAATAGTCTGAGTGGCCTCCAAGACCCAACTATCGCCCGCATGTCCATCTGCTCAGAGGACCAGTGCAGTCTTCTGGCCAGCAGCCCTGAAGAAAGCTGGCCTTCCTCCAAGAGCTACAACCTCAACCGGACACCCAGCAACACCACCCTCAATAACAACACTAACGCCCAACAAGGAAACCACATTCGCCAACCGTCAGATAGCTCAAACACCACCTCCACCACCACTGGAAGCGATGTCATCATAAATCCTGGAACCAGCACCACCTCCGCAACCACCCAGAATGAAAATGTCCGCGTGGTGCATCTGAAGAGGGGCCTAAACCCTGGAGATCCTCCTGAGATCCTTAAAGTTTCCTCTGAAACCGTCACCTTCGGAGAGGAGCGAGAAAGTATCCTGTAGTTGACTAGATCTGGATCTATTGCCTTCTGGTCCTAGCTGGTTGATGTTCTGTGGTGTCAGTGCATGCTCGGTGGAAtgcttaaataaatgtaatggtGGTTATTGTGACATTTCCACATGTTAAGTGTTATTAAAGTGCTTTTCATTCTCTTCAGAGGTCTATTTCAAGGGAGGTTACTTACTTTGTTAAACCTAAAATGTGCGAAACTtcgtttttttagttttaaaatgggaGGTATGTCAAACCTGAAAGACTTAGATATGGGCTTGACTTACCCCACTTTCTCAGCTGTGACATATCTCCTATTCTGAAACAAAAAGAGTTTCCCTAACTAGAGTTTtgacttaacctcctttctgaagtTCACCATCGTAAAGTTAAATATTTGTGGAGTTTCTAATCAGTGTTAGTAGCTTAATAACTTATTAGTCATCAGTTGTATGGCTTTGGAAATcagtgttgtagtggtgtcccccAATGTTCAATTGTTTGATGTCGTGGTGAAGCAACCTAAACCTTTTGATCTGGCTAGGAAATGTGTTGTACCGAGTTGTCCTGCATGCGATCATCGTGCTGTAGCTACAGTATTATATAAGCAGTGACAAGCTTGTGTCAGGCTGCTAAATTAGTCAGTAGAAACTGCATGCCTCTGGATGTTAGTCTAGCACTATTGACAGCTGTCTTGAAAAGTAAAGCATGTTTTGTGGTGCTCGTCTTCAACATGGAATGGAATAAACCTGACAGTAGTCATGTTT
>TCONS_00034609
AAGATGGTGAATAGGAAAACAGAAGCGCCGTCGACCGACAGAAAAACACCTTTCTAACCGGACATTGATCAGACTTCAGGATATTTTAGCGTTTCTTTTCAGTGAGagcagacagacagacatcagTCACAGTCAGCAATCTGCAGGCATCCAGACAAAAGCAGAGGACAGCGTGACACTGAGTGTGCTGGATCTATGCTGTCACATACTGCTTTATAAGAATAACTCTGGGGTCGTGTTTCACAGATAGAGCTTACAGAGCCTCTTGGATTCCAGAGGCGTCTGAGTGAGTGGCAATCATGGACACCACAACCTCCATCAAGATGACCACTCTGGCCATCCAGAACCTCTTCAGCTATGTGGAGGAAGAGAATCTGGCTGCGGTCAAAGTCCACCTTGACAAGTTCAAAGAAGTGGACGGTCGAAGCGATAACGGACAGACTCCTCTGATGCTGGCCTCGGAGCAGGGCAGTCTTGAAATTGTTCAAGAACTCATCCGAAGGGGTGCCAACGTCAATTTGGATGATGTGGACTGCTGGTCTGCTCTGATCTCTGCAGCAAAGGAGG

Function

symbol description
kidins220b Enables PDZ domain binding activity. Predicted to act upstream of or within nervous system development. Predicted to be located in late endosome. Is expressed in hindbrain; motor neurons; and retina. Orthologous to human KIDINS220 (kinase D interacting substrate 220).

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005768 endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7824 Enables PDZ domain binding activity. Predicted to act upstream of or within nervous system development. Predicted to be located in late endosome. Is expressed in hindbrain; motor neurons; and retina. Orthologous to human KIDINS220 (kinase D interacting substrate 220).

Ensembl:

ensembl_id ENSDARG00000017338

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034608 False 5959 mRNA 0.50 28 29743904 29783644
TCONS_00034609 True 567 mRNA 0.49 5 29743936 29751242

Neighbor

gene id symbol gene type direction distance location
XLOC_017407 mboat2b coding upstream 744 29690901 ~ 29743160 (+)
XLOC_017406 BX255963.2 coding upstream 60349 29680929 ~ 29683555 (+)
XLOC_017405 asap2b coding upstream 68446 29634653 ~ 29675458 (+)
XLOC_017404 adam17b coding upstream 130275 29586529 ~ 29613629 (+)
XLOC_017403 ywhaqa coding upstream 158568 29565906 ~ 29585336 (+)
XLOC_017409 NA coding downstream 247934 30031578 ~ 30084286 (+)
XLOC_017410 NA coding downstream 383490 30167134 ~ 30178215 (+)
XLOC_017411 rnaseh1 coding downstream 595159 30378803 ~ 30385570 (+)
XLOC_017412 NA coding downstream 603380 30387024 ~ 30431438 (+)
XLOC_017413 myt1la coding downstream 662327 30445971 ~ 30574029 (+)
XLOC_017400 NA non-coding upstream 474542 29231556 ~ 29269362 (+)
XLOC_017397 NA non-coding upstream 515598 29178710 ~ 29228306 (+)
XLOC_017396 NA non-coding upstream 704674 29031156 ~ 29039230 (+)
XLOC_017395 AL928866.2 non-coding upstream 731362 28995857 ~ 29012542 (+)
XLOC_017418 NA non-coding downstream 1118894 30902538 ~ 30906716 (+)
XLOC_017420 NA non-coding downstream 1191390 30975034 ~ 30982570 (+)

Expression


Co-expression Network