XLOC_017461 (pla2g4ab)


Basic Information

Item Value
gene id XLOC_017461
gene name pla2g4ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34129465 ~ 34148190 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034696
ACTGCTTCAAATATTgttgAACAACAAATCTCACACAAATTCAAAGTGAAGGTTTTACGGGCTGAAAATGTCACCAAAGGAGCTCTCGGAGACCTGTTGGATACCCCTGACCCATATGTGGAGCTGTTCATTCCCACTTCACCTGAGAGCAGGAAGAAAACGCGTCACATAGACAATGACATCAATCCAGAGTGGAATGAGACTTTTGAATTTATCCTCGACCCCAACCAAGACAACGTGCTGaagCTGACATTAATGGATGCTAACTATGTTGTGGATGAAACGTTGGGTACAGCCTCATATGACATCTCTAAACTCAAAGTTGGACAAACAATGCTGGTGTCATTCCTAATAGGCAAAATGACCAATGTGTTTTTAGAACTTTCCTTGGAGGAGTGCTTAGCGATGGACCTGCGATTCAATCTGGATCTGTGTCCTAAAGAAAAGCTCTACAGACAACACAGACGAGACAAAGTCATGCTGGCCATCAAGAAACTGCTGAACATCGAGAAACCTTCTTCCCTCCCTTGCTCTCCTCATGAGGTTCCAGTGATCGCTGTCCTGGGTTCAGGAGGAGGTTTCAGGGCAATGATCGGGTTCTCGGGGGTTATGAAGGCTTTGTATATTTCTGGTGTTCTGGACTGTGTCACATATGTTGCTGGTCTGTCTGGATCAACCTGGTACATGTCCACTCTGTACTCCCACCCAGAGTTCCCCACAAAAGGTCCAGAGCAGATCAACCAGGAGCTGATGAATAGTGTGAGCAGCAACCCACTCCGATTACTCCATCCCAAACACATCACCAATTACATACATGCCCTCTGGAGCAAGAAAACCACAGGACAGCCTGTTACCTTTACAGATATATTCGGGATGCTAATAGGAGAGACGCTCATTCCTGCTAGGATGGACACCAAGTTGAGAGATTTGCAGGAAAAGATAAATGAAGCTCAGGCTCCTCTGCCCTTGTTCACCTGTTTGCATGTAAAACCTGATGTCTCAGAGCTTAAGTTTGCAGATTGGGTGGAGTTCAGTCCGTATGAGATTGGAATGGCTAAATATGGAACATTTATGACCCCTGACCTTTTTGGAAGCAAGTTCTTCATGGGAAATGTGGTCAAGAAACACGAAGaaaaccctcttcactttcttaTGGGTGTATGGGGTAGTGCATTCTCCATCCTGTTCAACAGAATTCTGGGATTGACAGATGTGACAAACGGCAGCACCATGGAGGAAGAACTAGAACAGATCAAACCTGAACACATTGTAGGTGAGGACAGTCTAGATAATGACGAAGACCCCCATAAAGGTGAGACTGATGAGCATCAGGCCAGCTGGATTCAGCGCATGGTTGGCTCTCTCTTCAGTGATTCAGTGCTTTTTAATACAAGAGAAGGCAGAGCTGGAAAAGTACACAACTTCATGCTGGGCTTGAACCTCAACAATGATGTGCCATTTTCCCCTTACACTGAGACCATCAGCTGTACAGAGGATGAGGTTGATGCggtcacagACCCATTTGAGTTTGACCGTATCTATGAGCCACTAGATGTAAAGAGTAGGAAGATCCATGTGGTGGACAGTGGCTTGACTTTCAACCTCCCCTATCCTCTGATTCTAAGGCCTCAGAGAGGTGTTGACCTTATCATATCCTTTGACTTTTCTGCACGACCAAGTGATTCTAGTCCTCCATTTAAGGAACTTCTACTAGCTGAGAAATGGGCTCGAATGAACAAACTTCCCTTTCCCAAGATTGACCCAAAGGTGTTTGACCGGGAAGGGTTAAAGGAGTGCTATGTGTTTAAACCAAAAAAAGGAGAAAGAAACTGCCCTACTATCATCCATTTCGTCTTGGTTAATATCGAATTTAGGAAATTCAAAGCCCcagGTGTTCCACGTGGGTCGGACAAAGAGAGAGAATTTGCAGACTTTGACATCTTTGATGACCCACAGACGCCCTACTCCACCTTCAACTTTTATTATTCCCATCAAGCCTTTACCCAGCTGCATGATCTGATGGAGTTCAACACACTTAACAACATAGAGGTCATCAAAGAAGGCATAAAAGATAGCATATTGTACAGGAAGGAGATTCCATCTCGCTGCTCTGCATCTCTTTCTCTCAGTGAAGCACAAAAGAAAAAACGCCTAAAGAAATAG
>TCONS_00034697
ACTGCTTCAAATATTgttgAACAACAAATCTCACACAAATTCAAAGTGAAGGTTTTACGGGCTGAAAATGTCACCAAAGGAGCTCTCGGAGACCTGTTGGATACCCCTGACCCATATGTGGAGCTGTTCATTCCCACTTCACCTGAGAGCAGGAAGAAAACGCGTCACATAGACAATGACATCAATCCAGAGTGGAATGAGACTTTTGAATTTATCCTCGACCCCAACCAAGACAACGTGCTGaagCTGACATTAATGGATGCTAACTATGTTGTGGATGAAACGTTGGGTACAGCCTCATATGACATCTCTAAACTCAAAGTTGGACAAACAATGCTGGTGTCATTCCTAATAGGCAAAATGACCAATGTGTTTTTAGAACTTTCCTTGGAGGAGTGCTTAGCGATGGACCTGCGATTCAATCTGGATCTGTGTCCTAAAGAAAAGCTCTACAGACAACACAGACGAGACAAAGTCATGCTGGCCATCAAGAAACTGCTGAACATCGAGAAACCTTCTTCCCTCCCTTGCTCTCCTCATGAGGTTCCAGTGATCGCTGTCCTGGGTTCAGGAGGAGGTTTCAGGGCAATGATCGGGTTCTCGGGGGTTATGAAGGCTTTGTATATTTCTGGTGTTCTGGACTGTGTCACATATGTTGCTGGTCTGTCTGGATCAACCTGGTACATGTCCACTCTGTACTCCCACCCAGAGTTCCCCACAAAAGGTCCAGAGCAGATCAACCAGGAGCTGATGAATAGTGTGAGCAGCAACCCACTCCGATTACTCCATCCCAAACACATCACCAATTACATACATGCCCTCTGGAGCAAGAAAACCACAGGACAGCCTGTTACCTTTACAGATATATTCGGGATGCTAATAGGAGAGACGCTCATTCCTGCTAGGATGGACACCAAGTTGAGAGATTTGCAGGAAAAGATAAATGAAGCTCAGGCTCCTCTGCCCTTGTTCACCTGTTTGCATGTAAAACCTGATGTCTCAGAGCTTAAGTTTGCAGATTGGGTGGAGTTCAGTCCGTATGAGATTGGAATGGCTAAATATGGAACATTTATGACCCCTGACCTTTTTGGAAGCAAGTTCTTCATGGGAAATGTGGTCAAGAAACACGAAGaaaaccctcttcactttcttaTGGGTGTATGGGGTAGTGCATTCTCCATCCTGTTCAACAGAATTCTGGGATTGACAGATGTGACAAACGGCAGCACCATGGAGGAAGAACTAGAACAGATCAAACCTGAACACATTGTAGGTGAGGACAGTCTAGATAATGACGAAGACCCCCATAAAGGTGAGACTGATGAGCATCAGGCCAGCTGGATTCAGCGCATGGTTGGCTCTCTCTTCAGTGATTCAGTGCTTTTTAATACAAGAGAAGGCAGAGCTGGAAAAGTACACAACTTCATGCTGGGCTTGAACCTCAACAATGATGTGCCATTTTCCCCTTACACTGAGACCATCAGCTGTACAGAGGATGAGGTTGATGCggtcacagACCCATTTGAGTTTGACCGTATCTATGAGCCACTAGATGTAAAGAGTAGGAAGATCCATGTGGTGGACAGTGGCTTGACTTTCAACCTCCCCTATCCTCTGATTCTAAGGCCTCAGAGAGGTGTTGACCTTATCATATCCTTTGACTTTTCTGCACGACCAAGTGATTCTAGTCCTCCATTTAAGGAACTTCTACTAGCTGAGAAATGGGCTCGAATGAACAAACTTCCCTTTCCCAAGATTGACCCAAAGGTGTTTGACCGGGAAGGGTTAAAGGAGTGCTATGTGTTTAAACCAAAAAAAGGAGAAAGAAACTGCCCTACTATCATCCATTTCGTCTTGGTTAATATCGAATTTAGGAAATTCAAAGCCCcagGTGTTCCACGTGGGTCGGACAAAGAGAGAGAATTTGCAGACTTTGACATCTTTGATGACCCACAGACGCCCTACTCCACCTTCAACTTTTATTATTCCCATCAAGCCTTTACCCAGCTGCATGATCTGATGGAGTTCAACACACTTAACAACATAGAGGTCAGTTCAGCTCAGAGGAATCATCATAACCACAGTGCCAAAAGATGTGGGGTGTccaaatgcaaaaaaacaaaaagatcaaTTTATATCAAGATCCTTTTGTAA
>TCONS_00034698
gttgAACAACAAATCTCACACAAATTCAAAGTGAAGGTTTTACGGGCTGAAAATGTCACCAAAGGAGCTCTCGGAGACCTGTGTGATGGATACCCCTGACCCATATGTGGAGCTGTTCATTCCCACTTCACCTGAGAGCAGGAAGAAAACGCGTCACATAGACAATGACATCAATCCAGAGTGGAATGAGACTTTTGAATTTATCCTCGACCCCAACCAAGACAACGTGCTGaagCTGACATTAATGGATGCTAACTATGTTGTGGATGAAACGTTGGGTACAGCCTCATATGACATCTCTAAACTCAAAGTTGGACAAACAATGCTGGTGTCATTCCTAATAGGCAAAATGACCAATGTGTTTTTAGAACTTTCCTTGGAGGAGTGCTTAGCGATGGACCTGCGATTCAATCTGGATCTGTGTCCTAAAGAAAAGCTCTACAGACAACACAGACGAGACAAAGTCATGCTGGCCATCAAGAAACTGCTGAACATCGAGAAACCTTCTTCCCTCCCTTGCTCTCCTCATGAGGTTCCAGTGATCGCTGTCCTGGGTTCAGGAGGAGGTTTCAGGGCAATGATCGGGTTCTCGGGGGTTATGAAGGCTTTGTATATTTCTGGTGTTCTGGACTGTGTCACATATGTTGCTGGTCTGTCTGGATCAACCTGGTACATGTCCACTCTGTACTCCCACCCAGAGTTCCCCACAAAAGGTCCAGAGCAGATCAACCAGGAGCTGATGAATAGTGTGAGCAGCAACCCACTCCGATTACTCCATCCCAAACACATCACCAATTACATACATGCCCTCTGGAGCAAGAAAACCACAGGACAGCCTGTTACCTTTACAGATATATTCGGGATGCTAATAGGAGAGACGCTCATTCCTGCTAGGATGGACACCAAGTTGAGAGATTTGCAGGAAAAGATAAATGAAGCTCAGGCTCCTCTGCCCTTGTTCACCTGTTTGCATGTAAAACCTGATGTCTCAGAGCTTAAGTTTGCAGATTGGGTGGAGTTCAGTCCGTATGAGATTGGAATGGCTAAATATGGAACATTTATGACCCCTGACCTTTTTGGAAGCAAGTTCTTCATGGGAAATGTGGTCAAGAAACACGAAGaaaaccctcttcactttcttaTGGGTGTATGGGGTAGTGCATTCTCCATCCTGTTCAACAGAATTCTGGGATTGACAGATGTGACAAACGGCAGCACCATGGAGGAAGAACTAGAACAGATCAAACCTGAACACATTGTAGGTGAGGACAGTCTAGATAATGACGAAGACCCCCATAAAGAGGATGAGCATCAGGCCAGCTGGATTCAGCGCATGGTTGGCTCTCTCTTCAGTGATTCAGTGCTTTTTAATACAAGAGAAGGCAGAGCTGGAAAAGTACACAACTTCATGCTGGGCTTGAACCTCAACAATGATGTGCCATTTTCCCCTTACACTGAGACCATCAGCTGTACAGAGGATGAGGTTGATGCggtcacagACCCATTTGAGTTTGACCGTATCTATGAGCCACTAGATGTAAAGAGTAGGAAGATCCATGTGGTGGACAGTGGCTTGACTTTCAACCTCCCCTATCCTCTGATTCTAAGGCCTCAGAGAGGTGTTGACCTTATCATATCCTTTGACTTTTCTGCACGACCAAGTGATTCTAGTCCTCCATTTAAGGAACTTCTACTAGCTGAGAAATGGGCTCGAATGAACAAACTTCCCTTTCCCAAGATTGACCCAAAGGTGTTTGACCGGGAAGGGTTAAAGGAGTGCTATGTGTTTAAACCAAAAAAAGGAGAAAGAAACTGCCCTACTATCATCCATTTCGTCTTGGTTAATATCGAATTTAGGAAATTCAAAGCCCcagGTGTTCCACGTGGGTCGGACAAAGAGAGAGAATTTGCAGACTTTGACATCTTTGATGACCCACAGACGCCCTACTCCACCTTCAACTTTTATTATTCCCATCAAGCCTTTACCCAGCTGCATGATCTGATGGAGTTCAACACACTTAACAACATAGAGGTCATCAAAGAAGGCATAAAAGATAGCATATTGTACAGGAAGGAGATTCCATCTCGCTGCTCTGCATCTCTTTCTCTCAGTGAAGCACAAAAGAAAAAACGCCTAAAGAAATAGTCTAAAGGACAAGCCTGTTAATAAGGAGGTGGCGTAAGATGGCATTCTACGCACAAGAAGTTTACACATGTCACATCTCTTCAtggaaaccttttttttaaactgaaaacaGCTCAAGAAACTGTGAAACCTGATAATCTGGTTTGGGCCACATGAACATTTTCCATCTAGTTGTTTTCAATGTTATCTTTTAAAGTTAAAGGAAGAACTGACTGACTCAATGAAAACAGCGTTTACAGTCTCGTTGTTGAATTGAGCCAGACAATATGGTATGTAATGCCAGAGTAAACAAACTATATTCTTAAACATTTGTCTGTTTAAAGTGCTGAAAGATGTACTTCAAAGATGTGAAGCAGACAATTGTCTTAAAAATTGATTGTCTTCAGCAAAACAGACTTTGCAAAGACTGTTGGTGTCCAAGCAACATTTTAATTTTCTGACTGCACAGAAATGTTTTTAGagatcttcttttgttttctacAACTTTCATACTTTCCAGTTTCCTGCAAACATTTTgaataaacaaactgaaaattGC

Function

symbol description
pla2g4ab Enables phospholipase activity. Acts upstream of or within regulation of G1/S transition of mitotic cell cycle. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including Golgi apparatus; cytosol; and endoplasmic reticulum. Is expressed in midbrain; ovarian follicle stage I; ovarian follicle stage II; ovarian follicle stage III; and ovarian follicle stage IV. Orthologous to human PLA2G4A (phospholipase A2 group IVA).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0009395 phospholipid catabolic process biological_process
GO:2000045 regulation of G1/S transition of mitotic cell cycle biological_process
GO:0046475 glycerophospholipid catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0102567 phospholipase A2 activity (consuming 1,2-dipalmitoylphosphatidylcholine) molecular_function
GO:0102568 phospholipase A2 activity consuming 1,2-dioleoylphosphatidylethanolamine) molecular_function
GO:0004620 phospholipase activity molecular_function
GO:0004623 phospholipase A2 activity molecular_function
GO:0047498 calcium-dependent phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-325 Enables phospholipase activity. Acts upstream of or within regulation of G1/S transition of mitotic cell cycle. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including Golgi apparatus; cytosol; and endoplasmic reticulum. Is expressed in midbrain; ovarian follicle stage I; ovarian follicle stage II; ovarian follicle stage III; and ovarian follicle stage IV. Orthologous to human PLA2G4A (phospholipase A2 group IVA).

Ensembl:

ensembl_id ENSDARG00000017141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034696 False 2163 mRNA 0.45 17 34129465 34144371
TCONS_00034697 False 2154 mRNA 0.45 17 34129465 34148190
TCONS_00034698 True 2684 mRNA 0.43 16 34130714 34144909

Neighbor

gene id symbol gene type direction distance location
XLOC_017460 prg4b coding upstream 89827 34029820 ~ 34039638 (+)
XLOC_017459 si:dkey-97o5.1 coding upstream 119230 33994580 ~ 34010235 (+)
XLOC_017458 zp3a.1 coding upstream 135767 33991801 ~ 33993698 (+)
XLOC_017457 zp3a.2 coding upstream 140038 33987465 ~ 33989427 (+)
XLOC_017456 si:dkey-51e6.1 coding upstream 143722 33981946 ~ 33985743 (+)
XLOC_017462 arpc5b coding downstream 3480 34151670 ~ 34155608 (+)
XLOC_017463 ivns1abpa coding downstream 172445 34320635 ~ 34341183 (+)
XLOC_017464 znfl1k coding downstream 226545 34374735 ~ 34379656 (+)
XLOC_017465 trmt1l coding downstream 240235 34388425 ~ 34399442 (+)
XLOC_017466 niban1a coding downstream 252525 34400715 ~ 34419523 (+)
XLOC_017455 BX296562.2 non-coding upstream 154173 33959570 ~ 33975292 (+)
XLOC_017441 NA non-coding upstream 1070921 33057784 ~ 33058544 (+)
XLOC_017440 NA non-coding upstream 1279362 32827420 ~ 32850103 (+)
XLOC_017433 CU138515.1 non-coding upstream 1659011 32466886 ~ 32470454 (+)
XLOC_017431 BX927123.1 non-coding upstream 1727105 32270907 ~ 32402360 (+)
XLOC_017471 BX279523.2 non-coding downstream 513365 34661555 ~ 34663198 (+)
XLOC_017472 BX279523.3 non-coding downstream 515132 34663322 ~ 34664762 (+)
XLOC_017475 NA non-coding downstream 613553 34761743 ~ 34766443 (+)
XLOC_017476 NA non-coding downstream 616260 34764450 ~ 34765817 (+)
XLOC_017482 NA non-coding downstream 813964 34962154 ~ 34965993 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_09655219_09666785 PLA2G4A, PLA2G4AB coding CI01000325 null 9655219 ~ 9668818 (+)