XLOC_017647


Basic Information

Item Value
gene id XLOC_017647
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46470117 ~ 46475280 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036416
attgaaggacaggatttcatattgagaagatgtactgctgtaaatcaagactaccagtttgtgagctgatatgcagtggaaattgacatccagaaggaagtcatagaggaaacaccagctgatgcaagtgctgcagaagaattcaatcgaatatcagtaagaaatgtgagatccaagttctacgctgcattggacacacactgctcgtttgattgaaataaataaaaaaaaaacaggagaaaattgcagaggaaaactagaagaaattttcaacatgttaattcaaaggtcatctggcagcagttctccggggtctttcagtcctttagagggatgagtctaaagaaattttcaggatgtgttttgatgtaattgtagagtcggacttcagtgcagaagatgttggcctgctgactgtcgtctgtgaagatgtctaaagaacctcattatggatgcaatgtgggcctttatactggaaggaaaagtggttatggactgccacatgcagtatgtctctttttttgctttgatttacacactgaattcggactacccaaagactttgagcaatgcatttgaatttgttcaacgtgtgttgcttttgctgggagggaagcgtaatgtgttttattcggcgagtgcctatatactgctgtgctttatgtttaaaggttcaggtataatggcatgtttaattacaaagtgttgctttttaacatgttgctgtttgcagtgttacatttaggactgcagcattttggtgtttaaaacactttctttttttttttttaccaaaaaagtgtattgtgatttatagggttgtcaaaagtattgagtttggtaccaatcggtactgaaataaaaaaaaaaaagtccatccatttcccactaacattgcaagaactgattggccattgtgttcacatgctcagtagatatgactgattggctttgaaggtcattatttttaccacacttcaccactgttcaccaggtgcaaagatacaaagacactggataacttcaaagcactg
>TCONS_00036417
ggatttcatattgagaagatgtactgctgtaaatcaagactaccagtttgtgagctgatatgcagtggaaattgacatccagaaggaagtcatagaggaaacaccagctgatgcaagtgctgcagaagaattcaatcgaatatcagtaagaaatgtcatctggcagcagttctccggggtctttcagtcctttagagggatgagtctaaagaaattttcaggatgtgttttgatgtaattgtagagtcggacttcagtgcagaagatgttggcctgctgactgtcgtctgtgaagatgtctaaagaacctcattatggatgcaatgtgggcctttatactggaaggaaaagtggttatggactgccacatgcagtatgtctctttttttgctttgatttacacactgaattcggactacccaaagactttgagcaatgcatttgaatttgttcaacgtgtgttgcttttgctgggagggaagcgtaatgtgttttattcggcgagtgcctatatactgctgtgctttatgtttaaaggttcaggtataatggcatgtttaattacaaagtgttgctttttaacatgttgctgtttgcagtgttacatttaggactgcagcattttggtgtttaaaacactttctttttttttttttaccaaaaaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0061053 somite development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036416 False 1034 lncRNA 0.38 6 46470117 46475280
TCONS_00036417 True 665 lncRNA 0.39 6 46470128 46475045

Neighbor

gene id symbol gene type direction distance location
XLOC_017645 rad51 coding upstream 27980 46427963 ~ 46442137 (+)
XLOC_017644 NA coding upstream 46642 46368446 ~ 46423475 (+)
XLOC_017643 NA coding upstream 102409 46362451 ~ 46367708 (+)
XLOC_017642 NA coding upstream 113089 46351913 ~ 46357028 (+)
XLOC_017641 flvcr2b coding upstream 121053 46311242 ~ 46349064 (+)
XLOC_017648 si:ch211-153j24.3 coding downstream 68772 46544052 ~ 46564468 (+)
XLOC_017649 AL929435.1 coding downstream 77943 46553223 ~ 46554160 (+)
XLOC_017650 batf coding downstream 97270 46572550 ~ 46646556 (+)
XLOC_017651 jdp2b coding downstream 111398 46586678 ~ 46595151 (+)
XLOC_017652 adcy3b coding downstream 176636 46651916 ~ 46693942 (+)
XLOC_017637 BX957286.1 non-coding upstream 190639 46277906 ~ 46279478 (+)
XLOC_017619 NA non-coding upstream 473685 45987917 ~ 45996432 (+)
XLOC_017654 NA non-coding downstream 265824 46741104 ~ 46762693 (+)
XLOC_017657 CR385078.2 non-coding downstream 629430 47104710 ~ 47104873 (+)
XLOC_017658 CR385078.3 non-coding downstream 630814 47106094 ~ 47106257 (+)
XLOC_017659 CR385078.4 non-coding downstream 635576 47110856 ~ 47113322 (+)

Expression


Co-expression Network