XLOC_017643


Basic Information

Item Value
gene id XLOC_017643
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46362451 ~ 46367708 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036690
GCAGCAAATAAGACAGAAACTCACCGCCAGAGCTTGAATATGTGTCTGTCAGTGCTGTATTTATTCCGCTTTTGTGTCAGTGCTCTTTTATTCCGTCTTCACACGGTTTTGTATTTACTAACACGGACTCGCTCCGCTTTCATTCTGCGCCCTCCGCCGAAAACCACGCCTACGTGGCTGACGTCAGGTGATGATATGCTAATTACGCTAAAGAGGCGGGAGTCGAAGGGTTGTTGGTGCCCGAGGGAAAGACAGCCGTTGAGCTCAGCATTCCTGCACACACTGTTGCTGCACGTCGCAAACTCTGAGAAAGCAATGGCTAATTTCAAGATTAGTTGCTGTATTTATAAACACAATACAAGAATTTGACCAGCAACAAACACATTGCCGGCAGGGATTTTAGTTTTCCAAAATGCTGGGATGGTTTTTCAGAAGAGGACGAGGTAGAGACAAATCACTGACTAGAGGAAGAGGATTGAAATAGACTCAAAGTGACTCTGTTTCTACGGTAACTGTGGACGGGGAGGTACGGGAGATGAGAGCGAGGCAAAACAAACGCTGGCGCTGCCTCCGTGGCAACAGCTACATCATTGGTTCTTGTTTCATAGtaaagacctgttaaaaaaaaattaaatcacaagAGGCCCAAGAGACACCTCCCTCACAACTGCATGTTGCATCAGAAAGCTCCTACAAGAGGaagagcaaaacacacacacacacacaaacacatcacatGCTCCACTTCACTTCACAGCCCCCCTCCTTCCTCCCCGCTCTCCCGCCAAAACATCTCAGCGAGTAAATCCTGCCTAGAAACCAAACAGCTGACTTCTGCCTCTCTGTGATTGGTGCAGCTCCCTAGCAACGGCGTGTGATTATTCAGCCAATCAGGCGCTGACTTTCCAGCACTTTCAGCCAATGGCACACACTCCCACCTCAGCCAGGCAGTAACAGAGACTTGGTAACTGTCcggcagaacagaaacacactgTGATTGGCTGGATCTGTGCTGCGTCCTCATTGGCTGCTCATGACGATCTCTCAGtcattcatgtttttttgtttttttgcggcTGCTCTCTTTTGCCCTGAAGGGAAACACCCACAGCAGAAGGTCAACTTCTCTGCGCCCTGATTGGCCGAGCAACAACGTGGACTCCTAGTAACAAACCACAATTGCTATAGCAGGGTGTGGTTAGGCTTCTGTCAGTCATCCAAATGCTAGCCAAACATGATGTTGTTGCTGCCGTTCTGATCTTAGCTAGAAGTATTTTATATGACAAACAGGCCTTCATTAGCATAGTTTTTGCACAGGGCGTACAgttacacatagacatcacctagatactgtataactgcaggttaaccaTGTGTATATGTAATAACTTccactgttaaaagctattattaGTTACAAGttaattaaagtaattattaagttatggtaactaattaCATTAACTTTTCTGAATTCTATTGTAATGGAATAATGTACACCTTTTATAAAGCTGcattgaaacaataattattgtgaaaagcgctttacaaataaacttaGGTTTGATTGAATTACTCAAGATTCATACTAAGAATATTTGTTTAGTCATTAATATCTGATTAGACTCACTTTTCtaatatttgtctgttttttataaacatatacactacctgacaaaagtcttgtcgtctattcaagttttaggaacaacaaataaaaacttgacttctagttgatcgtttgtcATCAGAAgcggcttatatgaaaagcaaaggcctctagattacgcttattttaccaaaataaaagatgatcatgccttgatttattaatcaatgaatatttcattaggacagtaaggtctgactttgcttggacaaaagtcttgtcacttaacataaataatgtatggCATGTAGTAGAATATAaattcatggtgcagtggaagaagaatgaatattgtgtatgactcccatgagcttgaaggactgcatccatacatctctgacttattaataaagtcatctggaatggcaaagacagcgttcttgcag
>TCONS_00036691
CGAAGGGTTGTTGGTGCCCGAGGGAAAGCCAGAATTGAAGTGCACAGTTCAAGTGCACTTGTTCTGAACGGGCAGTGAGTCACCTGAATATTACAATCCTCCTGTTCTCACTCGCTGTTGATGACATCATCCTTTTAGACAGCCGTTGAGCTCAGCATTCCTGCACACACTGTTGCTGCACGTCGCAAACTCTGAGAAAGCAATGGCTAATTTCAAGATTAGTTGCTGTATTTATAAACACAATACAAGAATTTGACCAGCAACAAACACATTGCCGGCAGGGATTTTAGTTTTCCAAAATGCTGGGATGGTTTTTCAGAAGAGGACGAGGTAGAGACAAATCACTGACTAGAGGAAGAGGATTGAAATAGACTCAAAGTGACTCTGTTTCTACGGTAACTGTGGACGGGGAGGTACGGGAGATGAGAGCGAGGCAAAACAAACGCTGGCGCTGCCTCCGTGGCAACAGCTACATCATTGGTTCTTGTTTCATAGtaaagacctgttaaaaaaaaattaaatcacaagAGGCCCAAGAGACACCTCCCTCACAACTGCATGTTGCATCAGAAAGCTCCTACAAGAGGaagagcaaaacacacacacacacacaaacacatcacatGCTCCACTTCACTTCACAGCCCCCCTCCTTCCTCCCCGCTCTCCCGCCAAAACATCTCAGCGAGTAAATCCTGCCTAGAAACCAAACAGCTGACTTCTGCCTCTCTGTGATTGGTGCAGCTCCCTAGCAACGGCGTGTGATTATTCAGCCAATCAGGCGCTGACTTTCCAGCACTTTCAGCCAATGGCACACACTCCCACCTCAGCCAGGCAGTAACAGAGACTTGGTAACTGTCcggcagaacagaaacacactgTGATTGGCTGGATCTGTGCTGCGTCCTCATTGGCTGCTCATGACGATCTCTCAGtcattcatgtttttttgtttttttgcggcTGCTCTCTTTTGCCCTGAAGGGAAACACCCACAGCAGAAGGTCAACTTCTCTGCGCCCTGATTGGCCGAGCAACAACGTGGACTCCTAGTAACAAACCACAATTGCTATAGCAGGGTGTGGTTAGGCTTCTGTCAGTCATCCAAATGCTAGCCAAACATGATGTTGTTGCTGCCGTTCTGATCTTAGCTAGAAGTATTTTATATGACAAACAGGCCTTCATTAGCATAGTTTTTGCACAGGGCGTACAgttacacatagacatcacctagatactgtataactgcaggttaaccaTGTGTATATGTAATAACTTccactgttaaaagctattattaGTTACAAGttaattaaagtaattattaagttatggtaactaattaCATTAACTTTTCTGAATTCTATTGTAATGGAATAATGTACACCTTTTATAAAGCTGcattgaaacaataattattgtgaaaagcgctttacaaataaacttaGGTTTGATTGAATTACTCAAGATTCATACTAAGAATATTTGTTTAGTCATTAATATCTGATTAGACTCACTTTTCtaatatttgtctgttttttataaacatatacactacctgacaaaagtcttgtcgtctattcaagttttaggaacaacaaataaaaacttgacttctagttgatcgtttgtcATCAGAAgcggcttatatgaaaagcaaaggcctctagattacgcttattttaccaaaataaaagatgatcatgccttgatttattaatcaatgaatatttcattaggacagtaaggtctgactttgcttggacaaaagtcttgtcacttaacataaataatgtatggCATGTAGTAGAATATAaattcatggtgcagtggaagaagaatgaatattgtgtatgactcccatgagcttgaaggactgcatccatacatctctgacttattaataaagtcatctggaatggcaaagacagcgttcttgcag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036690 False 2055 lncRNA 0.42 3 46362451 46367708
TCONS_00036691 True 1942 lncRNA 0.41 3 46362674 46367708

Neighbor

gene id symbol gene type direction distance location
XLOC_017642 NA coding upstream 5423 46351913 ~ 46357028 (+)
XLOC_017641 flvcr2b coding upstream 13387 46311242 ~ 46349064 (+)
XLOC_017640 taar14b coding upstream 57005 46303923 ~ 46305446 (+)
XLOC_017639 taar14d coding upstream 69924 46291135 ~ 46292527 (+)
XLOC_017638 taar14f coding upstream 75117 46286082 ~ 46287334 (+)
XLOC_017644 NA coding downstream 738 46368446 ~ 46423475 (+)
XLOC_017645 rad51 coding downstream 60255 46427963 ~ 46442137 (+)
XLOC_017646 NA coding downstream 74838 46442546 ~ 46523077 (+)
XLOC_017647 NA coding downstream 102409 46470117 ~ 46475280 (+)
XLOC_017648 si:ch211-153j24.3 coding downstream 176344 46544052 ~ 46564468 (+)
XLOC_017637 BX957286.1 non-coding upstream 82973 46277906 ~ 46279478 (+)
XLOC_017619 NA non-coding upstream 366019 45987917 ~ 45996432 (+)
XLOC_017618 AL929237.2 non-coding upstream 375668 45985461 ~ 45986783 (+)
XLOC_017617 NA non-coding upstream 460294 45900148 ~ 45902157 (+)
XLOC_017649 AL929435.1 non-coding downstream 185515 46553223 ~ 46554160 (+)
XLOC_017654 NA non-coding downstream 373396 46741104 ~ 46762693 (+)

Expression


Co-expression Network