XLOC_001765 (vps26c)


Basic Information

Item Value
gene id XLOC_001765
gene name vps26c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 76864 ~ 81705 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003560
GTGAGAGCGACACGGAAGCTGGTGAGCGGCGGAGATGAGCGTTTCTCTGGACATCCGACTGAAGCGGGCGAATAAAGTCTACCATGAgggggagcgTCTGTGTGGGCTGCTGGTGGTGGTCAGCAGAGACCCGCTCCAGCATCAGGGAGTGTCCCTCAGTCTGGAGGGTCTCGTCAACCTGCAGCTCAGCGCAAAGAGCGTCGGTGTGTTCGAGGCCTTCTACAACTCTGTcaagCCCATCCAGCTGGTGTCCAGCACTATGGAGGTGGCCAAGCCGGGGAAGGTTCCGGCGGGCAGGACTGAGATCCCCTTCGAGTTCCCTCTGCAGGCTAAAGGAAACAAGCAGCTGTACGAGACCTACCACGGCGTGTTCGTCAACATCCAGTACACACTCCGCTGTGACATCAGACGCTCACTGCTGGCCAAAGACCTCAGCAAGAGCTGCGAGTTCATGGTGCACTGTcagccaCAGAAGGCCAAGCTGCAGCCTAACCCAGTGGACTTCAGCATCACACCAGAGACTCTGCAGAACATCAGAGAGCGGGCGTCTCTGCCGCGGTTCCTGATCCGGGGTCATCTGGACGCCACCTGCTGCTCGATCACGCGTCCCCTGAGCGGAGAGCTGGTGGTGGAGAACTCAGAGGTGCCCATCAAGAGCATCGAGCTGCAGCTGGTGCGGGTGGAGACCTGCggctgtGCAGAGGGCTACGCCAGGGACGCCACAGAGATCCAGAATATCCAGATAGCAGAGGGTGACGTGTGTCACGGGCTCTCCATCCCCATCTACATGGTGTTCCCCAGACTCTTCACCTGCCCCACGCTCGAGACCACCAACTTCAAAGTGGagtTCGAGGTCAACATCGTGATCGTCCTCCACGATGATCATCTGATCACAGAAAACTTCCCCCTGAAGCTGCTGCGGCTGTGATGCGGATCCTCCGTCTCGGATGATTCAGTCTGGATCTGCAGCTCATCTCTCCTCATCTAGATCATGTTCCCCCTCAGCATCACTGATCTCCGTCACACAGGAGAATCCCTCATCCATGAAGCCACAGCGTCAGTGAACTCTCTGCGCCTCCTGCTGCAGAGCCGCGCGGCCAATGATGACCGACTCTCCTCCTCATCTTCCCCTGAGCGGGGTTTCAGGTGTTTCTCCACAGCAGTGAACACGGAGCGCTTCAGCTGAAGATCAGCACTCACCAGAGAATAATCAGCGTATGATGATGATCAGcactctgctgtgtgtgtgtgtgtgtgtgtgtgttgctttggCACAAATAAAAGTGTGTTTCATTCA

Function

symbol description
vps26c Predicted to be involved in intracellular protein transport. Predicted to be active in endosome. Orthologous to human VPS26C (VPS26 endosomal protein sorting factor C).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005768 endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-6 Predicted to be involved in intracellular protein transport. Predicted to be active in endosome. Orthologous to human VPS26C (VPS26 endosomal protein sorting factor C).

Ensembl:

ensembl_id ENSDARG00000075650

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003560 True 1297 mRNA 0.57 8 76864 81705

Neighbor

gene id symbol gene type direction distance location
XLOC_001764 NA coding upstream 17116 58893 ~ 59748 (+)
XLOC_001763 NA coding upstream 46026 30360 ~ 30838 (+)
XLOC_001762 riox2 coding upstream 48666 23088 ~ 28198 (+)
XLOC_001761 tiprl coding upstream 54084 15970 ~ 22780 (+)
XLOC_001766 pigp coding downstream 29163 110868 ~ 116036 (+)
XLOC_001767 NA coding downstream 40193 121898 ~ 133969 (+)
XLOC_001768 KCNJ15 coding downstream 76885 158590 ~ 159597 (+)
XLOC_001769 ets2 coding downstream 106055 187760 ~ 196815 (+)
XLOC_001770 CU469093.1 coding downstream 130077 211782 ~ 211947 (+)
XLOC_001773 NA non-coding downstream 200619 282324 ~ 283931 (+)
XLOC_001776 NA non-coding downstream 316639 398344 ~ 398759 (+)
XLOC_001779 NA non-coding downstream 337528 419233 ~ 420892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000203_00100197_00102137 DSCR3 coding CI01000203 null 100088 ~ 102237 (+)
bowfin (Amia calva) AMCG00016273 dscr3 coding CM030122.1 CM030122.1 14223888 ~ 14233628 (+)