AMCG00016273 (dscr3)


Basic Information

Item Value
gene id AMCG00016273
gene name dscr3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14223888 ~ 14233628 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016273
GCCGAGCGGCGCTAATCACGTGGTTAAGCGTAACCGGAAATATTTGCCGCTGAGAATCAGgaagaagaaatcaaaatgaGTGCTAGCGTGGACATCAGACTTAAGAGAGCAAATAAAGTCTACCATGAAGGGgAGGTGCTGGCGGGGATCGTGGTGATTGTGAGCCGGGAGGCAGTGCAGCACCAGGGCATCTTTCTGACCATGGAGGGTGTAGTGAACCTGCAGCTCAGCACCAAGAGTGTGGGTGTCTTTGAAGCCTTCTACAACTCTGTCAAGccAATTCAGCTGATCAGCAGCAACATTGAGGTGGTCAAGCCAGGGAAGGTCCCCAGTGGGAAAACAGAAATTCCCTTTGAATTTCCACTGCTCGTTAAGGGGAACAAAGTGCTGTACGAAACTTACCACGGCGTCTTTGTCAACATCCAGTACACCCTGAGATGTGATATGAAGCGCTCCCTGCTGGCCAAAGACCTCAGCAAGACCTGCGAGTTCATGGTTCACTCTCTGcctCAGAAAGGGAAGCTCCCGCCCAACCCAGTGGATTTTACCATCACCCCCGAGACACTGCAGAACATCAAAGAGCCGCTAACCGGGGAGTTGGTGGTGGAGAGCTCGGAGGTGCCCATCAAGAGCATCGAGCTCCAGCTGGTCCGGGTGGAGACCTGCGGCTGTGCAGAGGGATATGCAAGGGAGGCTACAGAGATCCAGAACATCCAGATAGCAGAGGGAGACGTCTGCCACAGCCTCCCCATCCCCATCTACATGGTCTTCCCCCGGCTCTTCACCTGCCCCACCCTCGAGACCACCAACTTTAAATTTGAAGTGAACGTTGTGATGGTTCTGCACGATGACCACCTCATCACAGAGAACTTCCCCCTGAAGCTGTGCCGGGTTtgagcaccccccaccccaaggaAGGATCCCGGTGGCTTCATACTTCCCACCTCAACAGACACTAGAAAAAGATGGGAGTTATTTGGCTAGAGCTGGATGATTTACAGAGATTAACGCCAAGAACTTTGACCACATCTACAAAGACAGGACTCTTGTCTCTCTGTAGTCATCTGTCCAGTGAAGATAAAAAGGCTTCACAGAAAGACAGCAGATATTATAACTGGTTGAAGCTGGGTCTTTATTCAGTTACACCTATACTGTAACATTTACTaacaactgaaaacatttgttaatgAAATAAGTTCTAGTATAAATCACTAACTAAAACCGAAGCTATTTGGAGAATGCAATGTGAACTACAGCagacaaatttgtttttaaattcagattagTTCCGAACATACATATAATGCTTCAAATAACTACCAGCTTCTAGTCTGTCTAAATGACAAAATTGATTAGCAGGTAACAGAACCCTGAGAATACATCTTCTGTTGTAAAGAATGGCTTATTCTGGACTCGGAGGACCTGCCCAAGTTGCATACTGAACTTGAATGAATTTGCAGGAAAAAGTGCACatagagcaaaaaaaaaagtatgaaactACAGCTGGAGCATCGGAGGGGTTGCTTTGAGACTCCGCAATGAGACGAGGGAATCGCAGGAAGAGATGTGTAAATTAACACCTGAGGTACTGTTTAATTAATGCAAGTTACAGTGGTTTCTGTAAATTGGTGGCATCAACTGTGCTAAAACAtgccttgtgtttttttaatttatagtagtgttgattaaaatgc

Function

NR:

description
PREDICTED: Down syndrome critical region protein 3 isoform X1

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0030904 retromer complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016273 True 1694 mRNA 0.47 8 14223888 14233628

Neighbor

gene id symbol gene type direction distance location
AMCG00016270 NA coding upstream 46758 14176792 ~ 14177130 (+)
AMCG00016269 kcnj6 coding upstream 61460 14161493 ~ 14162428 (+)
AMCG00016265 erg,LOC106567682 coding upstream 139395 14069281 ~ 14084493 (+)
AMCG00016264 NA coding upstream 243443 13976780 ~ 13980445 (+)
AMCG00016261 NA coding upstream 269596 13949907 ~ 13954292 (+)
AMCG00016272 NA coding downstream 24981 14258609 ~ 14264073 (+)
AMCG00016271 NA coding downstream 36689 14270317 ~ 14282590 (+)
AMCG00016279 hlcs coding downstream 62734 14296362 ~ 14298779 (+)
AMCG00016278 NA coding downstream 115344 14348972 ~ 14383679 (+)
AMCG00016285 cblb,LOC107576804,LOC107699267 coding downstream 268506 14502134 ~ 14503691 (+)
G12489 dyrk1a,LOC107744208 non-coding upstream 27254 14194935 ~ 14196634 (+)
G12487 NA non-coding upstream 39202 14182605 ~ 14184686 (+)
G12406 NA non-coding upstream 393001 13829734 ~ 13830887 (+)
G12368 NA non-coding upstream 564229 13657393 ~ 13659659 (+)
G12347 NA non-coding upstream 584300 13638302 ~ 13639588 (+)
G12549 NA non-coding downstream 150277 14383905 ~ 14384657 (+)
G12566 NA non-coding downstream 163621 14397249 ~ 14398414 (+)
G12589 NA non-coding downstream 215184 14448812 ~ 14449212 (+)
G12591 NA non-coding downstream 217882 14451510 ~ 14451754 (+)
G12605 NA non-coding downstream 342959 14576587 ~ 14615709 (+)
G12351 NA other upstream 586887 13635442 ~ 13637001 (+)
G12349 NA other upstream 592091 13631285 ~ 13631797 (+)
G12348 NA other upstream 596177 13621879 ~ 13627711 (+)
AMCG00016241 NA other upstream 834252 13271584 ~ 13389636 (+)
AMCG00016221 NA other upstream 1436989 12778224 ~ 12786899 (+)
G12587 NA other downstream 204143 14437771 ~ 14438606 (+)
AMCG00016288 NA other downstream 511688 14745316 ~ 14783535 (+)
AMCG00016329 NA other downstream 2250727 16484355 ~ 16486003 (+)
G13012 NA other downstream 2883165 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 3328790 17562418 ~ 17599581 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001765 vps26c coding NC_007121.7 CM002894.2 76864 ~ 81705 (+)