G12368


Basic Information

Item Value
gene id G12368
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13657393 ~ 13659659 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15258
tttttattctgcttttgcatttattaataatttcaataaataagaGCAAGCAGAGAACACAAGCACGTCACAATCAAATATTTGCAGtacattacttttttctgtcttctttttaaataattctcaTACTAACAGCATGAATGGGAGATAGCACCAAGTGTGGTGTGCTCAGCACATTACATGGACAATCCGTGATACGCAACAAGCCCACAGCTGCAAAATATTAATTAGGCGGCTCTCACCCCCTGGAGACACAGTCGCTCGAGGCTGGTTTGACTGTGAGGACTCAGATAAACAGACAAGAAGATAAGCTGCCACTCCCAAGCAGGTGGGTTCAACTATAACAAAAGGTTTGGTGCTGAAAAATGGAGGTCATGAAATGCCATGCAAATCCCACAGAATACATTGGTTGGGTAATCTACCCAGTCATACTGGCCTCTGATGGTGGAGTGAATTCAGACTGTGTACAGAAGCGCAGTTCTGGTTCAGCCCCCCTCTGATGCTAAGAAACTGTGGTCAGCTACAGCAGACATCTATTGTTAAGAATAAGATCTGCACATATGAACAGGGAGGCACAATCTTATATAAATCTGGCTATTCATTAACAAGAGAAGGTGTGGTCATCCAAAACACACCTTCGTTTTGGTGTATGTGTAGCGTTTGTTGGTGCATTTGCAAAGCATTTGTAAAGTATCACTTTCAAATGTCATGTGCCTAACAGTAATTGCCTTCACCAAGAAAGGAGTCTGGAGCCCGTGGCCTGAGAGCAACAATATATcagtctgaaaaaaaacaatacacaaatacagcattaaatacagtaaatacaactTTACCACTAGGCCACAGGGCTATTtgaatacagcaaaataaagaagaattataaacaatatctgcaaaataaaaagaaagaaagaaatttaaaaacaaaaaagatgaaATGCTTAACCCCAAGCTTTTGATCCTAGACACCAAGCCCTCTAGACCTCTCTAATACACTGTATATGTTATGCTTGTTATGCCGTTTATTTGACAAGTTGTCCGCCAGCCTCCTGTAGCATGCTGCTGCTGTCAGATCTATGAGGCTTGGCAGATGATGTCTACTGAGCCCCAGATGGGCTCCCAAGGCCTCAGGGTATAACTCTTCATATGCTGCTACCAAGAGAAGACGCACTCAGCTGGCTGAGTTCATCGCAGAGCACTCCCACCTTCCTGATGCTTTCTCATACTCCTTGCATTTCTGTTACTCGATTGTCACTCCTACTTTGACATCCTCTTCACAATCAGTGTGAATGTGTTAACTTGTCAGATCCTGCTAGAAAACAATACGTTTGGCTTTCTTTTCAATTCAACAGCATATTTCGTCATCTTCAAATTATCATTTTACTGTCTGTTTATTGTTTAGGCCTGTTGTCTGTGggattttccttttgttgttgCTTAATGCATGAATCATTACCCATCCAGATTCTGAAGAAATTAACTTATGCTACCATTCTTTGCGTGTTTTAGGCTTTAGAGATGTCGATTTTGAATGTACAATTGAAAAGCTTTGTGTGAGAGataatattaaagtaatattaTAGTGTTTAGGTATCAAGTGAGCAACTTATTTACTTTAGTgggcatattattattattattattataggacaggaaatgcatttaaaagcaagcTCTAAACTACACTGCAATACCCTCACATGCAGTAACAGGTTATCTTATTACTGTAACTCACTTGGTTTCTTAGCAACCAAATTATCAGAACCAGATACCCTCCATTAAGTCTAATCTTTGAGTGACCTTTCCTACAATTCAATAAATCCAAGTCCAGAAAACAGAGGCAACTACAAATGACTTTTCGGGCGAAGCAGCGCAGGTGCCTCTGGATTGGGGAAAGTGGTGTTGCACATTCTGATGGACGGGGAAGGAGGCAGGCAAAGAGAGGATGGGGATTGGCGGGAATAGGGCAGGTGTTTGGGCACTTGACAGAAGCTCAGTTACAGTGTTGGAAAGCAGGGTGACAATGTTCACGCAGTCTGACTAACATTTCATCACATTACAGCACGCTGGACGACACCTTAAACACTAACAAAGACATAcgtgttggtttgtttcttaaatatcaGGCTGATGCCTCAAAGGGTGCACTGAGATGTGTGTGTACCACATAAAGGCGCGTGTTGTTTGGGGGGTAAGGATAGCAATaaacctacagtgagggaaaaaagtatttgatcccctgttgattttgtacgtttgccNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15258 True 2267 lncRNA 0.37 1 13657393 13659659

Neighbor

gene id symbol gene type direction distance location
AMCG00016250 NA coding upstream 39749 13597834 ~ 13617644 (+)
AMCG00016249 atg101,LOC107751375,LOC107686213,LOC107589731 coding upstream 68420 13583044 ~ 13588973 (+)
AMCG00016242 NA coding upstream 201477 13445038 ~ 13455916 (+)
AMCG00016239 usp25,LOC107653727 coding upstream 410377 13212058 ~ 13247016 (+)
AMCG00016240 NA coding upstream 469000 13185034 ~ 13188393 (+)
AMCG00016256 NA coding downstream 17335 13676994 ~ 13705883 (+)
AMCG00016255 uvrag,LOC107577365,LOC107589407,LOC107686127,LOC107691651 coding downstream 47555 13707214 ~ 13714691 (+)
AMCG00016254 uvrag,LOC106603537,LOC106567946 coding downstream 66712 13726371 ~ 13742178 (+)
AMCG00016253 NA coding downstream 116863 13776522 ~ 13783628 (+)
AMCG00016260 emsy coding downstream 221147 13880806 ~ 13895173 (+)
G12347 NA non-coding upstream 17805 13638302 ~ 13639588 (+)
G12331 NA non-coding upstream 105535 13551594 ~ 13551858 (+)
G12330 NA non-coding upstream 110795 13546399 ~ 13546598 (+)
G12289 NA non-coding upstream 183608 13473488 ~ 13473785 (+)
G12220 NA non-coding upstream 583641 13071571 ~ 13073752 (+)
G12406 NA non-coding downstream 170075 13829734 ~ 13830887 (+)
G12487 NA non-coding downstream 522946 14182605 ~ 14184686 (+)
G12489 dyrk1a,LOC107744208 non-coding downstream 535276 14194935 ~ 14196634 (+)
G12549 NA non-coding downstream 724246 14383905 ~ 14384657 (+)
G12566 NA non-coding downstream 737590 14397249 ~ 14398414 (+)
G12351 NA other upstream 20392 13635442 ~ 13637001 (+)
G12349 NA other upstream 25596 13631285 ~ 13631797 (+)
G12348 NA other upstream 29682 13621879 ~ 13627711 (+)
AMCG00016241 NA other upstream 267757 13271584 ~ 13389636 (+)
AMCG00016221 NA other upstream 870494 12778224 ~ 12786899 (+)
G12587 NA other downstream 778112 14437771 ~ 14438606 (+)
AMCG00016288 NA other downstream 1085657 14745316 ~ 14783535 (+)
AMCG00016329 NA other downstream 2824696 16484355 ~ 16486003 (+)
G13012 NA other downstream 3457134 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 3902759 17562418 ~ 17599581 (+)

Expression


Co-expression Network